miRNA display CGI


Results 1 - 20 of 513 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6359 5' -64.6 NC_001847.1 + 97663 0.84 0.028056
Target:  5'- aGACCCGCCGC-UGCCaGGCCGGGcccGGCc -3'
miRNA:   3'- aCUGGGCGGCGaACGG-CCGGUCC---CCG- -5'
6359 5' -64.6 NC_001847.1 + 37580 0.76 0.115489
Target:  5'- -cGCUgGCCGCUgcggcUGCggCGGCCGGGGGCc -3'
miRNA:   3'- acUGGgCGGCGA-----ACG--GCCGGUCCCCG- -5'
6359 5' -64.6 NC_001847.1 + 135020 0.75 0.126633
Target:  5'- aGGCCCGCgggcggggccggggCGCggggcGCCGGacCCAGGGGCg -3'
miRNA:   3'- aCUGGGCG--------------GCGaa---CGGCC--GGUCCCCG- -5'
6359 5' -64.6 NC_001847.1 + 106745 0.66 0.507822
Target:  5'- -cGCCCG-CGCUggcGCCGcGgCGGGGGg -3'
miRNA:   3'- acUGGGCgGCGAa--CGGC-CgGUCCCCg -5'
6359 5' -64.6 NC_001847.1 + 101052 0.8 0.058127
Target:  5'- cGcACCCGCCGag-GCCGGCCccGGGGCc -3'
miRNA:   3'- aC-UGGGCGGCgaaCGGCCGGu-CCCCG- -5'
6359 5' -64.6 NC_001847.1 + 60482 0.79 0.071394
Target:  5'- aUGGCgCCGCCGCUUugugcgcgcGCgGGCCGGcGGGCc -3'
miRNA:   3'- -ACUG-GGCGGCGAA---------CGgCCGGUC-CCCG- -5'
6359 5' -64.6 NC_001847.1 + 46208 0.78 0.087544
Target:  5'- cGGCggCCGCCGCcggGCCGGCCGcGGGGa -3'
miRNA:   3'- aCUG--GGCGGCGaa-CGGCCGGU-CCCCg -5'
6359 5' -64.6 NC_001847.1 + 111408 0.78 0.087544
Target:  5'- aGGcCCCGCCagggGCggcGCuCGGCCGGGGGCg -3'
miRNA:   3'- aCU-GGGCGG----CGaa-CG-GCCGGUCCCCG- -5'
6359 5' -64.6 NC_001847.1 + 83936 0.76 0.104475
Target:  5'- gGGCCCGCuCGaagUGCgcgcggGGCCGGGGGCg -3'
miRNA:   3'- aCUGGGCG-GCga-ACGg-----CCGGUCCCCG- -5'
6359 5' -64.6 NC_001847.1 + 99768 0.76 0.115489
Target:  5'- gUGAgCCGCCGCg-GCUuugGGCgGGGGGCa -3'
miRNA:   3'- -ACUgGGCGGCGaaCGG---CCGgUCCCCG- -5'
6359 5' -64.6 NC_001847.1 + 92156 0.76 0.104738
Target:  5'- gGGCCCGCCGacagcgaacccggGCCGGCCGGcGGCc -3'
miRNA:   3'- aCUGGGCGGCgaa----------CGGCCGGUCcCCG- -5'
6359 5' -64.6 NC_001847.1 + 97698 0.76 0.103951
Target:  5'- aGGCCCGCUGCUgcgcucgccgucGUCGG-CGGGGGCa -3'
miRNA:   3'- aCUGGGCGGCGAa-----------CGGCCgGUCCCCG- -5'
6359 5' -64.6 NC_001847.1 + 132397 0.83 0.036438
Target:  5'- cGGCgCCGCCGC--GCCgGGCCGGGGGCc -3'
miRNA:   3'- aCUG-GGCGGCGaaCGG-CCGGUCCCCG- -5'
6359 5' -64.6 NC_001847.1 + 129322 0.76 0.107132
Target:  5'- gGGCCUGCCGg--GCgcggGGCCGGGGGCg -3'
miRNA:   3'- aCUGGGCGGCgaaCGg---CCGGUCCCCG- -5'
6359 5' -64.6 NC_001847.1 + 133049 0.81 0.047263
Target:  5'- cGGCCCGCCGCcgcGCgGGCCccgcGGGGCg -3'
miRNA:   3'- aCUGGGCGGCGaa-CGgCCGGu---CCCCG- -5'
6359 5' -64.6 NC_001847.1 + 131994 0.78 0.087544
Target:  5'- cGGCCCGCCGCgccGCCGGCgCcgccGGGCu -3'
miRNA:   3'- aCUGGGCGGCGaa-CGGCCG-Guc--CCCG- -5'
6359 5' -64.6 NC_001847.1 + 134378 0.76 0.109853
Target:  5'- cGGCgCCGCCgGCggcggGCCGGCCucgcccuagGGGGGCc -3'
miRNA:   3'- aCUG-GGCGG-CGaa---CGGCCGG---------UCCCCG- -5'
6359 5' -64.6 NC_001847.1 + 6676 0.76 0.121394
Target:  5'- aGGCUagGCCGCggcgGCCGGCCGGGcGCg -3'
miRNA:   3'- aCUGGg-CGGCGaa--CGGCCGGUCCcCG- -5'
6359 5' -64.6 NC_001847.1 + 100865 0.81 0.048505
Target:  5'- cGGCCCGCCGgggGUCGGCggCAGGGGCg -3'
miRNA:   3'- aCUGGGCGGCgaaCGGCCG--GUCCCCG- -5'
6359 5' -64.6 NC_001847.1 + 108474 0.79 0.071394
Target:  5'- aGGCCCGCCcaggcgcgaagGUggGCCGGCC-GGGGCc -3'
miRNA:   3'- aCUGGGCGG-----------CGaaCGGCCGGuCCCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.