miRNA display CGI


Results 1 - 20 of 513 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6359 5' -64.6 NC_001847.1 + 41069 0.65 0.513398
Target:  5'- gGGCUgGCCGCgcaaacguacuggUGCCGGcCCAGcuGCg -3'
miRNA:   3'- aCUGGgCGGCGa------------ACGGCC-GGUCccCG- -5'
6359 5' -64.6 NC_001847.1 + 8 0.66 0.495831
Target:  5'- -cGCCgCGCCGC--GCgGGCCcccugcgaccccggGGGGGUg -3'
miRNA:   3'- acUGG-GCGGCGaaCGgCCGG--------------UCCCCG- -5'
6359 5' -64.6 NC_001847.1 + 44103 0.66 0.489427
Target:  5'- -cGCCCGCCGCcUGCgCGcaagaugaGCCGGuugcuuuacguGGGCg -3'
miRNA:   3'- acUGGGCGGCGaACG-GC--------CGGUC-----------CCCG- -5'
6359 5' -64.6 NC_001847.1 + 130915 0.66 0.489427
Target:  5'- cGugCCGgCGCgcGCCGGCaccgcgcaGGGCu -3'
miRNA:   3'- aCugGGCgGCGaaCGGCCGguc-----CCCG- -5'
6359 5' -64.6 NC_001847.1 + 108755 0.66 0.489427
Target:  5'- cGuuCCUGCCGCgcugggcGCCGgacgcGCCGGGcGGCc -3'
miRNA:   3'- aCu-GGGCGGCGaa-----CGGC-----CGGUCC-CCG- -5'
6359 5' -64.6 NC_001847.1 + 29088 0.66 0.489427
Target:  5'- --cCCUGCCGCcggcgaGCaCGGCgCGGGcGGCg -3'
miRNA:   3'- acuGGGCGGCGaa----CG-GCCG-GUCC-CCG- -5'
6359 5' -64.6 NC_001847.1 + 28399 0.66 0.489427
Target:  5'- --cCCCGCCGCggcGCCaGCgCGGGcGCg -3'
miRNA:   3'- acuGGGCGGCGaa-CGGcCG-GUCCcCG- -5'
6359 5' -64.6 NC_001847.1 + 114405 0.66 0.489427
Target:  5'- aGGCCCGCCuCaccGCCGGUCuguccgacGGcGGCa -3'
miRNA:   3'- aCUGGGCGGcGaa-CGGCCGGu-------CC-CCG- -5'
6359 5' -64.6 NC_001847.1 + 32677 0.66 0.489427
Target:  5'- cUGcAUCCGCCGgUgGCUGG--AGGGGCg -3'
miRNA:   3'- -AC-UGGGCGGCgAaCGGCCggUCCCCG- -5'
6359 5' -64.6 NC_001847.1 + 93735 0.66 0.498587
Target:  5'- cGGCCgGCUGCUagaccGCgCGGUCcGGGaGCg -3'
miRNA:   3'- aCUGGgCGGCGAa----CG-GCCGGuCCC-CG- -5'
6359 5' -64.6 NC_001847.1 + 204 0.66 0.498587
Target:  5'- -cGCCC-CCGCcc-CCGGCgccCGGGGGCc -3'
miRNA:   3'- acUGGGcGGCGaacGGCCG---GUCCCCG- -5'
6359 5' -64.6 NC_001847.1 + 66676 0.66 0.498587
Target:  5'- -cGCCCGCgCgGCgggGCCccGGCCGcGGGCg -3'
miRNA:   3'- acUGGGCG-G-CGaa-CGG--CCGGUcCCCG- -5'
6359 5' -64.6 NC_001847.1 + 106745 0.66 0.507822
Target:  5'- -cGCCCG-CGCUggcGCCGcGgCGGGGGg -3'
miRNA:   3'- acUGGGCgGCGAa--CGGC-CgGUCCCCg -5'
6359 5' -64.6 NC_001847.1 + 3932 0.66 0.507822
Target:  5'- -cGCCCG-CGCUggcGCCGcGgCGGGGGg -3'
miRNA:   3'- acUGGGCgGCGAa--CGGC-CgGUCCCCg -5'
6359 5' -64.6 NC_001847.1 + 58539 0.66 0.507822
Target:  5'- aGG-CCGCCGCggucuucGCCGccGCCAGcGGCg -3'
miRNA:   3'- aCUgGGCGGCGaa-----CGGC--CGGUCcCCG- -5'
6359 5' -64.6 NC_001847.1 + 2812 0.66 0.507822
Target:  5'- cGGCCgccaGCCGC--GCCGgcaccuccGCCGGcGGGCu -3'
miRNA:   3'- aCUGGg---CGGCGaaCGGC--------CGGUC-CCCG- -5'
6359 5' -64.6 NC_001847.1 + 54815 0.66 0.507822
Target:  5'- cUGGCgCCGCUGUUUGCCG-CCAc-GGCc -3'
miRNA:   3'- -ACUG-GGCGGCGAACGGCcGGUccCCG- -5'
6359 5' -64.6 NC_001847.1 + 32869 0.66 0.506895
Target:  5'- cGACCUcacggcgGCCGacgGCgaGGCCucGGGGGCc -3'
miRNA:   3'- aCUGGG-------CGGCgaaCGg-CCGG--UCCCCG- -5'
6359 5' -64.6 NC_001847.1 + 74655 0.66 0.505044
Target:  5'- cGGCCCGCgCGCgcacaaagcggcggcGCCauGGCggacgcgcccgaCGGGGGCa -3'
miRNA:   3'- aCUGGGCG-GCGaa-------------CGG--CCG------------GUCCCCG- -5'
6359 5' -64.6 NC_001847.1 + 132127 0.66 0.502272
Target:  5'- gUGACCgccccuauugggcggCGCUGC-UGCCGcGCaggguGGGGCc -3'
miRNA:   3'- -ACUGG---------------GCGGCGaACGGC-CGgu---CCCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.