miRNA display CGI


Results 61 - 80 of 513 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6359 5' -64.6 NC_001847.1 + 14146 0.72 0.202382
Target:  5'- cGGCCgGCUGCgcagcGgCGGCC-GGGGCg -3'
miRNA:   3'- aCUGGgCGGCGaa---CgGCCGGuCCCCG- -5'
6359 5' -64.6 NC_001847.1 + 14208 0.8 0.053796
Target:  5'- gGGCUgGCgGUcagGCCGGCCGGGGGCg -3'
miRNA:   3'- aCUGGgCGgCGaa-CGGCCGGUCCCCG- -5'
6359 5' -64.6 NC_001847.1 + 14285 0.75 0.137743
Target:  5'- --uCCCGCCGCggcgaaauggcgugGCCGGCCGccucucGGGGCc -3'
miRNA:   3'- acuGGGCGGCGaa------------CGGCCGGU------CCCCG- -5'
6359 5' -64.6 NC_001847.1 + 14320 0.66 0.462439
Target:  5'- --uCCCGCUGCUcgcggugggGCCgGGCguGGuGGCg -3'
miRNA:   3'- acuGGGCGGCGAa--------CGG-CCGguCC-CCG- -5'
6359 5' -64.6 NC_001847.1 + 14553 0.69 0.333513
Target:  5'- aUGACCgCGCCGCagcgcgggUGCUGGC---GGGCg -3'
miRNA:   3'- -ACUGG-GCGGCGa-------ACGGCCGgucCCCG- -5'
6359 5' -64.6 NC_001847.1 + 15119 0.67 0.420119
Target:  5'- cGGCCCugacgGCgGCggUGCUGGCCuugcuacugcgcgucGGGGCc -3'
miRNA:   3'- aCUGGG-----CGgCGa-ACGGCCGGu--------------CCCCG- -5'
6359 5' -64.6 NC_001847.1 + 15290 0.69 0.326384
Target:  5'- cGAuCCCGaCGCUgaccgGCaCGGCguCGGGGGCc -3'
miRNA:   3'- aCU-GGGCgGCGAa----CG-GCCG--GUCCCCG- -5'
6359 5' -64.6 NC_001847.1 + 17232 0.68 0.370852
Target:  5'- aGACgUCGCgCGCgUGCCGaGCCuccacGGGGUa -3'
miRNA:   3'- aCUG-GGCG-GCGaACGGC-CGGu----CCCCG- -5'
6359 5' -64.6 NC_001847.1 + 17454 0.66 0.47135
Target:  5'- -cGCCCucgguggcgGCCGUcagggagcGCaCGGUCAGGGGCa -3'
miRNA:   3'- acUGGG---------CGGCGaa------CG-GCCGGUCCCCG- -5'
6359 5' -64.6 NC_001847.1 + 17706 0.66 0.489427
Target:  5'- cGGCCaCGCCGCagUGCaCGuaCAGcGGCu -3'
miRNA:   3'- aCUGG-GCGGCGa-ACG-GCcgGUCcCCG- -5'
6359 5' -64.6 NC_001847.1 + 18377 0.67 0.425175
Target:  5'- gGGCCCGaugccucggcguccUCGCccUGCgGGCCcgcGGGGCu -3'
miRNA:   3'- aCUGGGC--------------GGCGa-ACGgCCGGu--CCCCG- -5'
6359 5' -64.6 NC_001847.1 + 18504 0.71 0.249653
Target:  5'- -uGCCCGCgGC-UGCCgaGGCCAGcgcugcGGGCg -3'
miRNA:   3'- acUGGGCGgCGaACGG--CCGGUC------CCCG- -5'
6359 5' -64.6 NC_001847.1 + 18699 0.68 0.386565
Target:  5'- cGGCCCGCgucacCGCcagcGCCGcggggagcGCCAGcGGGCg -3'
miRNA:   3'- aCUGGGCG-----GCGaa--CGGC--------CGGUC-CCCG- -5'
6359 5' -64.6 NC_001847.1 + 19242 0.67 0.453618
Target:  5'- -cGCCUG-CGCgaGCCGGCCAaGcGGCg -3'
miRNA:   3'- acUGGGCgGCGaaCGGCCGGUcC-CCG- -5'
6359 5' -64.6 NC_001847.1 + 19612 0.66 0.462439
Target:  5'- gGGCCCGa-GCU--CgGGCCcGGGGCg -3'
miRNA:   3'- aCUGGGCggCGAacGgCCGGuCCCCG- -5'
6359 5' -64.6 NC_001847.1 + 21408 0.69 0.319369
Target:  5'- gGGCCgGCCGaggauucggGCCGGCCgagcgAGcGGGCc -3'
miRNA:   3'- aCUGGgCGGCgaa------CGGCCGG-----UC-CCCG- -5'
6359 5' -64.6 NC_001847.1 + 21630 0.66 0.462439
Target:  5'- uUGGCCgG-CGCggGCCGcGCCcGGGcGCg -3'
miRNA:   3'- -ACUGGgCgGCGaaCGGC-CGGuCCC-CG- -5'
6359 5' -64.6 NC_001847.1 + 21744 0.68 0.36316
Target:  5'- cGACgcuacgCUGCCGCgacgUGCUGGCgucgcuGGGGCu -3'
miRNA:   3'- aCUG------GGCGGCGa---ACGGCCGgu----CCCCG- -5'
6359 5' -64.6 NC_001847.1 + 21747 0.7 0.292444
Target:  5'- cGGCCCGCgCGCgcggggggGCCGccggcGCCGGGcccGGCg -3'
miRNA:   3'- aCUGGGCG-GCGaa------CGGC-----CGGUCC---CCG- -5'
6359 5' -64.6 NC_001847.1 + 22135 0.66 0.479444
Target:  5'- gGGCCCggcggcggcggcgGCgCGCaaaaGCCGGCgCAGcGGGCc -3'
miRNA:   3'- aCUGGG-------------CG-GCGaa--CGGCCG-GUC-CCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.