miRNA display CGI


Results 61 - 80 of 513 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6359 5' -64.6 NC_001847.1 + 9828 0.66 0.489427
Target:  5'- cGGCCCGCCGCcgccaUGagccaCGGCCAGccuuGCc -3'
miRNA:   3'- aCUGGGCGGCGa----ACg----GCCGGUCcc--CG- -5'
6359 5' -64.6 NC_001847.1 + 27882 0.66 0.489427
Target:  5'- gGACgcggaCGUCGCggagUGCgccgaGGCCgaGGGGGCg -3'
miRNA:   3'- aCUGg----GCGGCGa---ACGg----CCGG--UCCCCG- -5'
6359 5' -64.6 NC_001847.1 + 22135 0.66 0.479444
Target:  5'- gGGCCCggcggcggcggcgGCgCGCaaaaGCCGGCgCAGcGGGCc -3'
miRNA:   3'- aCUGGG-------------CG-GCGaa--CGGCCG-GUC-CCCG- -5'
6359 5' -64.6 NC_001847.1 + 8932 0.66 0.474939
Target:  5'- cGAcCCCGCCaagugaGCUccgcccacccaGCCcccacccucaucucgGGCCGGGGGCg -3'
miRNA:   3'- aCU-GGGCGG------CGAa----------CGG---------------CCGGUCCCCG- -5'
6359 5' -64.6 NC_001847.1 + 102400 0.66 0.47135
Target:  5'- -cGCCCGCgaaaauaGCc-GCCGGCCGGaGGCc -3'
miRNA:   3'- acUGGGCGg------CGaaCGGCCGGUCcCCG- -5'
6359 5' -64.6 NC_001847.1 + 95820 0.66 0.47135
Target:  5'- gGACCCG--GCUcGgCGG-CAGGGGCa -3'
miRNA:   3'- aCUGGGCggCGAaCgGCCgGUCCCCG- -5'
6359 5' -64.6 NC_001847.1 + 29962 0.66 0.47135
Target:  5'- cGAaaagCCGCCGCc-GCCgacgcGGCCGGGccGGCg -3'
miRNA:   3'- aCUg---GGCGGCGaaCGG-----CCGGUCC--CCG- -5'
6359 5' -64.6 NC_001847.1 + 27123 0.66 0.47135
Target:  5'- cGG-CCGCCGCggcgagagaGCCGGCgA-GGGCu -3'
miRNA:   3'- aCUgGGCGGCGaa-------CGGCCGgUcCCCG- -5'
6359 5' -64.6 NC_001847.1 + 96426 0.66 0.47135
Target:  5'- gGGCCgGCgGCagGCgCGGCCccGGaGGCa -3'
miRNA:   3'- aCUGGgCGgCGaaCG-GCCGGu-CC-CCG- -5'
6359 5' -64.6 NC_001847.1 + 57657 0.66 0.47135
Target:  5'- cGACUCggGCCgGCggGCCgGGCCGGGcgcccGGCg -3'
miRNA:   3'- aCUGGG--CGG-CGaaCGG-CCGGUCC-----CCG- -5'
6359 5' -64.6 NC_001847.1 + 2221 0.66 0.480347
Target:  5'- aGGCCgccagCGCCGCggcGCUGGgCGcGGGCg -3'
miRNA:   3'- aCUGG-----GCGGCGaa-CGGCCgGUcCCCG- -5'
6359 5' -64.6 NC_001847.1 + 88925 0.66 0.480347
Target:  5'- aGAuuUCC-CCGCg-GCCGGCCcGGcGGCg -3'
miRNA:   3'- aCU--GGGcGGCGaaCGGCCGGuCC-CCG- -5'
6359 5' -64.6 NC_001847.1 + 125554 0.66 0.488516
Target:  5'- --cCCCGCgGCUgcgGCucgaucgCGGCCGcGGGCg -3'
miRNA:   3'- acuGGGCGgCGAa--CG-------GCCGGUcCCCG- -5'
6359 5' -64.6 NC_001847.1 + 123496 0.66 0.480347
Target:  5'- ---nCCGCCGCaaGCgGgGCC-GGGGCc -3'
miRNA:   3'- acugGGCGGCGaaCGgC-CGGuCCCCG- -5'
6359 5' -64.6 NC_001847.1 + 78325 0.66 0.480347
Target:  5'- -cGCgCGCCGCggGcCCGGCUuGGGcGCc -3'
miRNA:   3'- acUGgGCGGCGaaC-GGCCGGuCCC-CG- -5'
6359 5' -64.6 NC_001847.1 + 128451 0.66 0.480347
Target:  5'- cGGCCCuGCgCGCgcgcccgGCCGGCCGccGcGGCc -3'
miRNA:   3'- aCUGGG-CG-GCGaa-----CGGCCGGU--CcCCG- -5'
6359 5' -64.6 NC_001847.1 + 107300 0.66 0.480347
Target:  5'- gGGCCCGCacggggucucCGCUcaUGUCaGCCGcgcgugcgccGGGGCg -3'
miRNA:   3'- aCUGGGCG----------GCGA--ACGGcCGGU----------CCCCG- -5'
6359 5' -64.6 NC_001847.1 + 64856 0.66 0.480347
Target:  5'- cGGCgCGCCGCga-CCcGCCAGGcGCg -3'
miRNA:   3'- aCUGgGCGGCGaacGGcCGGUCCcCG- -5'
6359 5' -64.6 NC_001847.1 + 51967 0.66 0.480347
Target:  5'- --cCCCGCCGUccGCCaGCCcgucGGGCg -3'
miRNA:   3'- acuGGGCGGCGaaCGGcCGGuc--CCCG- -5'
6359 5' -64.6 NC_001847.1 + 30348 0.66 0.480347
Target:  5'- cGACCCGCUGCccggGgaGGCgCuGGcGGCg -3'
miRNA:   3'- aCUGGGCGGCGaa--CggCCG-GuCC-CCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.