miRNA display CGI


Results 101 - 120 of 513 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6359 5' -64.6 NC_001847.1 + 57988 0.67 0.453618
Target:  5'- gGACCgG-CGCggUGgCGGCgCAGGcGGCg -3'
miRNA:   3'- aCUGGgCgGCGa-ACgGCCG-GUCC-CCG- -5'
6359 5' -64.6 NC_001847.1 + 109248 0.67 0.453618
Target:  5'- aGACaaaaaGCCaGCggGUCGG-CAGGGGCg -3'
miRNA:   3'- aCUGgg---CGG-CGaaCGGCCgGUCCCCG- -5'
6359 5' -64.6 NC_001847.1 + 14144 0.67 0.453618
Target:  5'- gGGCCCG-CGCcugGgCGGCCGcuaGGGCg -3'
miRNA:   3'- aCUGGGCgGCGaa-CgGCCGGUc--CCCG- -5'
6359 5' -64.6 NC_001847.1 + 5802 0.67 0.453618
Target:  5'- cGGCaCCGCgcuugCGCUUGgCGcGCCGGGuGCg -3'
miRNA:   3'- aCUG-GGCG-----GCGAACgGC-CGGUCCcCG- -5'
6359 5' -64.6 NC_001847.1 + 80621 0.67 0.453618
Target:  5'- --cCCCGCCGCgguUGCCgauGGCgAcGGcGGCg -3'
miRNA:   3'- acuGGGCGGCGa--ACGG---CCGgU-CC-CCG- -5'
6359 5' -64.6 NC_001847.1 + 93754 0.67 0.453618
Target:  5'- aGGCCgCGCgGC-UGCCGGC--GGcGGCc -3'
miRNA:   3'- aCUGG-GCGgCGaACGGCCGguCC-CCG- -5'
6359 5' -64.6 NC_001847.1 + 131865 0.67 0.453618
Target:  5'- -uGCgCGCCGUgcucGCCGGCCGcGcGGCg -3'
miRNA:   3'- acUGgGCGGCGaa--CGGCCGGUcC-CCG- -5'
6359 5' -64.6 NC_001847.1 + 19242 0.67 0.453618
Target:  5'- -cGCCUG-CGCgaGCCGGCCAaGcGGCg -3'
miRNA:   3'- acUGGGCgGCGaaCGGCCGGUcC-CCG- -5'
6359 5' -64.6 NC_001847.1 + 11992 0.67 0.452741
Target:  5'- gGGCUCGCgcaaaccCGCUaGuuGGCuCuGGGGCg -3'
miRNA:   3'- aCUGGGCG-------GCGAaCggCCG-GuCCCCG- -5'
6359 5' -64.6 NC_001847.1 + 68537 0.67 0.444888
Target:  5'- cGuCCuCGCCGUcgGuuGcGCCagaAGGGGCg -3'
miRNA:   3'- aCuGG-GCGGCGaaCggC-CGG---UCCCCG- -5'
6359 5' -64.6 NC_001847.1 + 90316 0.67 0.444888
Target:  5'- cGACCgCGCCcaUUGCCGaCUGGGGcGCg -3'
miRNA:   3'- aCUGG-GCGGcgAACGGCcGGUCCC-CG- -5'
6359 5' -64.6 NC_001847.1 + 106081 0.67 0.444888
Target:  5'- -cGCCggCGCCGCgcgGCCGGCgAGcacGGCg -3'
miRNA:   3'- acUGG--GCGGCGaa-CGGCCGgUCc--CCG- -5'
6359 5' -64.6 NC_001847.1 + 68060 0.67 0.444888
Target:  5'- cGGCCuCGCgGCgcGCCuGCgGcGGGGCg -3'
miRNA:   3'- aCUGG-GCGgCGaaCGGcCGgU-CCCCG- -5'
6359 5' -64.6 NC_001847.1 + 133951 0.67 0.444888
Target:  5'- -cGCCCGacgaGCU-GCCGGCCGcGGcGGUg -3'
miRNA:   3'- acUGGGCgg--CGAaCGGCCGGU-CC-CCG- -5'
6359 5' -64.6 NC_001847.1 + 52021 0.67 0.444888
Target:  5'- aGGCgCGCacuaGC--GCuCGcGCCAGGGGCu -3'
miRNA:   3'- aCUGgGCGg---CGaaCG-GC-CGGUCCCCG- -5'
6359 5' -64.6 NC_001847.1 + 57078 0.67 0.444888
Target:  5'- gGACUccugCGCCGUcgugGCC-GCgAGGGGCg -3'
miRNA:   3'- aCUGG----GCGGCGaa--CGGcCGgUCCCCG- -5'
6359 5' -64.6 NC_001847.1 + 103187 0.67 0.444888
Target:  5'- gGGCCCGCCGCc-GCCGcGgCAGGc-- -3'
miRNA:   3'- aCUGGGCGGCGaaCGGC-CgGUCCccg -5'
6359 5' -64.6 NC_001847.1 + 31138 0.67 0.444888
Target:  5'- -cGCCCGacgaGCU-GCCGGCCGcGGcGGUg -3'
miRNA:   3'- acUGGGCgg--CGAaCGGCCGGU-CC-CCG- -5'
6359 5' -64.6 NC_001847.1 + 66989 0.67 0.444888
Target:  5'- cGGgCUGCgGCgcggcGCCGGagaAGGGGCa -3'
miRNA:   3'- aCUgGGCGgCGaa---CGGCCgg-UCCCCG- -5'
6359 5' -64.6 NC_001847.1 + 3268 0.67 0.444888
Target:  5'- -cGCCggCGCCGCgcgGCCGGCgAGcacGGCg -3'
miRNA:   3'- acUGG--GCGGCGaa-CGGCCGgUCc--CCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.