miRNA display CGI


Results 81 - 100 of 513 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6359 5' -64.6 NC_001847.1 + 23656 0.67 0.402712
Target:  5'- -aGCCCcCCGUgUGUgGGCUuGGGGCg -3'
miRNA:   3'- acUGGGcGGCGaACGgCCGGuCCCCG- -5'
6359 5' -64.6 NC_001847.1 + 25398 0.67 0.410944
Target:  5'- gGACCgCGgaaGCacUGCgGGCCAGGGGg -3'
miRNA:   3'- aCUGG-GCgg-CGa-ACGgCCGGUCCCCg -5'
6359 5' -64.6 NC_001847.1 + 25811 0.71 0.238415
Target:  5'- cUGcUCCGCCGC--GUCGGCCGGGcaGGCu -3'
miRNA:   3'- -ACuGGGCGGCGaaCGGCCGGUCC--CCG- -5'
6359 5' -64.6 NC_001847.1 + 26456 0.68 0.386565
Target:  5'- aGGCCgCGCgGCUguucGCCaGCgCGGGGaGCg -3'
miRNA:   3'- aCUGG-GCGgCGAa---CGGcCG-GUCCC-CG- -5'
6359 5' -64.6 NC_001847.1 + 26509 0.76 0.107132
Target:  5'- gGGCCUGCCGg--GCgcggGGCCGGGGGCg -3'
miRNA:   3'- aCUGGGCGGCgaaCGg---CCGGUCCCCG- -5'
6359 5' -64.6 NC_001847.1 + 27123 0.66 0.47135
Target:  5'- cGG-CCGCCGCggcgagagaGCCGGCgA-GGGCu -3'
miRNA:   3'- aCUgGGCGGCGaa-------CGGCCGgUcCCCG- -5'
6359 5' -64.6 NC_001847.1 + 27734 0.66 0.507822
Target:  5'- cGGCggaaGCCGCggcgGCgguugCGGCgGGGGGCu -3'
miRNA:   3'- aCUGgg--CGGCGaa--CG-----GCCGgUCCCCG- -5'
6359 5' -64.6 NC_001847.1 + 27882 0.66 0.489427
Target:  5'- gGACgcggaCGUCGCggagUGCgccgaGGCCgaGGGGGCg -3'
miRNA:   3'- aCUGg----GCGGCGa---ACGg----CCGG--UCCCCG- -5'
6359 5' -64.6 NC_001847.1 + 27906 0.74 0.14792
Target:  5'- cGGCCCgGCCGCgcuUGCggaGGCCAGGgcGGCc -3'
miRNA:   3'- aCUGGG-CGGCGa--ACGg--CCGGUCC--CCG- -5'
6359 5' -64.6 NC_001847.1 + 28032 0.69 0.348111
Target:  5'- ---gCCGCCGCcaucgaaGCCGaGgCGGGGGCg -3'
miRNA:   3'- acugGGCGGCGaa-----CGGC-CgGUCCCCG- -5'
6359 5' -64.6 NC_001847.1 + 28179 0.67 0.41928
Target:  5'- gGGCCCGaggaCUGCagcgaUGCCgGGCCcgaggacgauGGGGGCg -3'
miRNA:   3'- aCUGGGC----GGCGa----ACGG-CCGG----------UCCCCG- -5'
6359 5' -64.6 NC_001847.1 + 28322 0.72 0.202382
Target:  5'- cGACCCugcguGCCGCUcGCCGGC---GGGCa -3'
miRNA:   3'- aCUGGG-----CGGCGAaCGGCCGgucCCCG- -5'
6359 5' -64.6 NC_001847.1 + 28399 0.66 0.489427
Target:  5'- --cCCCGCCGCggcGCCaGCgCGGGcGCg -3'
miRNA:   3'- acuGGGCGGCGaa-CGGcCG-GUCCcCG- -5'
6359 5' -64.6 NC_001847.1 + 28484 0.7 0.273437
Target:  5'- gGGCCCGCUGCUgacGCCuucuGGCgAGGcguGGCc -3'
miRNA:   3'- aCUGGGCGGCGAa--CGG----CCGgUCC---CCG- -5'
6359 5' -64.6 NC_001847.1 + 28638 0.7 0.267326
Target:  5'- gGGCCCGCgGCcguguucgUGCCGGagaUGGGGGa -3'
miRNA:   3'- aCUGGGCGgCGa-------ACGGCCg--GUCCCCg -5'
6359 5' -64.6 NC_001847.1 + 28839 0.73 0.171173
Target:  5'- gUGACggCGCCGCUgccGCCGGUCGGGGacGCc -3'
miRNA:   3'- -ACUGg-GCGGCGAa--CGGCCGGUCCC--CG- -5'
6359 5' -64.6 NC_001847.1 + 28855 0.72 0.197638
Target:  5'- cGGCCgCGCgCGCgacGCCGGCgGcgcuGGGGCg -3'
miRNA:   3'- aCUGG-GCG-GCGaa-CGGCCGgU----CCCCG- -5'
6359 5' -64.6 NC_001847.1 + 28942 0.67 0.402712
Target:  5'- cGACCaaGCCGUggagacGCUGGCCGcggcGGGGUu -3'
miRNA:   3'- aCUGGg-CGGCGaa----CGGCCGGU----CCCCG- -5'
6359 5' -64.6 NC_001847.1 + 29052 0.67 0.453618
Target:  5'- -uGCgCGCCGUgcucGCCGGCCGcGcGGCg -3'
miRNA:   3'- acUGgGCGGCGaa--CGGCCGGUcC-CCG- -5'
6359 5' -64.6 NC_001847.1 + 29088 0.66 0.489427
Target:  5'- --cCCUGCCGCcggcgaGCaCGGCgCGGGcGGCg -3'
miRNA:   3'- acuGGGCGGCGaa----CG-GCCG-GUCC-CCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.