miRNA display CGI


Results 41 - 60 of 98 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6360 3' -56.7 NC_001847.1 + 111276 0.68 0.790836
Target:  5'- aGGcGGCGccGGGCCGGGGgcggcgcucggCCGGGggCGGGg -3'
miRNA:   3'- -CC-CCGU--UUCGGCUCUa----------GGUCCa-GCCU- -5'
6360 3' -56.7 NC_001847.1 + 54497 0.66 0.873233
Target:  5'- -cGGCGgcGCCGGGG-CCGGGgUGGGg -3'
miRNA:   3'- ccCCGUuuCGGCUCUaGGUCCaGCCU- -5'
6360 3' -56.7 NC_001847.1 + 110425 0.66 0.880395
Target:  5'- cGGGGUggGGUgGGGGggUGGGUgGGGg -3'
miRNA:   3'- -CCCCGuuUCGgCUCUagGUCCAgCCU- -5'
6360 3' -56.7 NC_001847.1 + 85774 0.66 0.865857
Target:  5'- gGGGGCAGcGGCCGAuGcggugcgcGUCgAGGgugCGGGc -3'
miRNA:   3'- -CCCCGUU-UCGGCU-C--------UAGgUCCa--GCCU- -5'
6360 3' -56.7 NC_001847.1 + 121423 0.67 0.8433
Target:  5'- aGGGCGGAGCCGuuGAgcggcccgaccgccgCCGGGUUGu- -3'
miRNA:   3'- cCCCGUUUCGGCu-CUa--------------GGUCCAGCcu -5'
6360 3' -56.7 NC_001847.1 + 23378 0.66 0.880395
Target:  5'- cGGuuuGCGAcGCUGAgcgaccgcaaguGAUCUAGGUCGGGg -3'
miRNA:   3'- -CCc--CGUUuCGGCU------------CUAGGUCCAGCCU- -5'
6360 3' -56.7 NC_001847.1 + 119454 1.11 0.001736
Target:  5'- gGGGGCAAAGCCGAGAUCCAGGUCGGAg -3'
miRNA:   3'- -CCCCGUUUCGGCUCUAGGUCCAGCCU- -5'
6360 3' -56.7 NC_001847.1 + 96271 0.66 0.8575
Target:  5'- -uGGCGGGGCCG-GAaCCGGGgccguacUCGGGg -3'
miRNA:   3'- ccCCGUUUCGGCuCUaGGUCC-------AGCCU- -5'
6360 3' -56.7 NC_001847.1 + 118908 0.8 0.186251
Target:  5'- cGGGGcCGGGGCCGAGG-CCGGGacgCGGAg -3'
miRNA:   3'- -CCCC-GUUUCGGCUCUaGGUCCa--GCCU- -5'
6360 3' -56.7 NC_001847.1 + 22426 0.81 0.172735
Target:  5'- gGGGGCGGGGcCCGAGA-CCAcgcGGUCGGGc -3'
miRNA:   3'- -CCCCGUUUC-GGCUCUaGGU---CCAGCCU- -5'
6360 3' -56.7 NC_001847.1 + 96205 0.77 0.281393
Target:  5'- cGGGGcCGGAGUCGGGG-CCGGaGUCGGGg -3'
miRNA:   3'- -CCCC-GUUUCGGCUCUaGGUC-CAGCCU- -5'
6360 3' -56.7 NC_001847.1 + 63114 0.69 0.714343
Target:  5'- cGGGGCcgccGCCGcgcacGGGUcgguugugcaCCAGGUCGGGc -3'
miRNA:   3'- -CCCCGuuu-CGGC-----UCUA----------GGUCCAGCCU- -5'
6360 3' -56.7 NC_001847.1 + 90860 0.69 0.694339
Target:  5'- cGGGGcCGGGGCUGGuGUCgAGGcCGGGg -3'
miRNA:   3'- -CCCC-GUUUCGGCUcUAGgUCCaGCCU- -5'
6360 3' -56.7 NC_001847.1 + 21407 0.7 0.684254
Target:  5'- cGGGCc-GGCCGAgGAUUCGGGcCGGc -3'
miRNA:   3'- cCCCGuuUCGGCU-CUAGGUCCaGCCu -5'
6360 3' -56.7 NC_001847.1 + 15383 0.69 0.724245
Target:  5'- cGGGGCGgucggcgucgGGGCUGGGG-CCGGGuuUCGGc -3'
miRNA:   3'- -CCCCGU----------UUCGGCUCUaGGUCC--AGCCu -5'
6360 3' -56.7 NC_001847.1 + 3970 0.68 0.762972
Target:  5'- cGGcGGCGAGggcGCCGGGggCCGGGcgcgCGGc -3'
miRNA:   3'- -CC-CCGUUU---CGGCUCuaGGUCCa---GCCu -5'
6360 3' -56.7 NC_001847.1 + 123561 0.7 0.663965
Target:  5'- cGGGGCuuGGGCCGGGG-CCgccgcgagcgGGGcCGGAc -3'
miRNA:   3'- -CCCCGu-UUCGGCUCUaGG----------UCCaGCCU- -5'
6360 3' -56.7 NC_001847.1 + 125384 0.67 0.817418
Target:  5'- gGGGGC---GCgCGAGGUCgAGGU-GGAc -3'
miRNA:   3'- -CCCCGuuuCG-GCUCUAGgUCCAgCCU- -5'
6360 3' -56.7 NC_001847.1 + 58180 0.67 0.825954
Target:  5'- cGGGGUcgucAAAGCCGccuucggccagcAGGcgcUCCGGG-CGGAu -3'
miRNA:   3'- -CCCCG----UUUCGGC------------UCU---AGGUCCaGCCU- -5'
6360 3' -56.7 NC_001847.1 + 59697 0.67 0.834315
Target:  5'- aGGGCAAcagcAGCCaGGAcUCCGcGGUCGcGAu -3'
miRNA:   3'- cCCCGUU----UCGGcUCU-AGGU-CCAGC-CU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.