miRNA display CGI


Results 41 - 60 of 98 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6360 3' -56.7 NC_001847.1 + 60052 0.67 0.842493
Target:  5'- cGGGGCGccGCCGAcGAUCUAauGGU-GGc -3'
miRNA:   3'- -CCCCGUuuCGGCU-CUAGGU--CCAgCCu -5'
6360 3' -56.7 NC_001847.1 + 63114 0.69 0.714343
Target:  5'- cGGGGCcgccGCCGcgcacGGGUcgguugugcaCCAGGUCGGGc -3'
miRNA:   3'- -CCCCGuuu-CGGC-----UCUA----------GGUCCAGCCU- -5'
6360 3' -56.7 NC_001847.1 + 68984 0.66 0.85827
Target:  5'- cGGGCAcGGCCGAGAgcacgUCCAGcaCGu- -3'
miRNA:   3'- cCCCGUuUCGGCUCU-----AGGUCcaGCcu -5'
6360 3' -56.7 NC_001847.1 + 75663 0.66 0.880395
Target:  5'- cGGGCGuuGCuCGuGAaggCCGGGUCGa- -3'
miRNA:   3'- cCCCGUuuCG-GCuCUa--GGUCCAGCcu -5'
6360 3' -56.7 NC_001847.1 + 76395 0.68 0.781678
Target:  5'- cGGGGgGGGcGCCGGGggCCGcGG-CGGGg -3'
miRNA:   3'- -CCCCgUUU-CGGCUCuaGGU-CCaGCCU- -5'
6360 3' -56.7 NC_001847.1 + 76815 0.67 0.79985
Target:  5'- gGGGGgAGGGCCacaGAGA-CCGGuGcCGGAg -3'
miRNA:   3'- -CCCCgUUUCGG---CUCUaGGUC-CaGCCU- -5'
6360 3' -56.7 NC_001847.1 + 77467 0.68 0.762972
Target:  5'- uGGGGCGGGcGCCGGGcgCCcGGccCGGc -3'
miRNA:   3'- -CCCCGUUU-CGGCUCuaGGuCCa-GCCu -5'
6360 3' -56.7 NC_001847.1 + 81242 0.67 0.842493
Target:  5'- cGGGCGGGGCCGucg-CgAGGaCGGGg -3'
miRNA:   3'- cCCCGUUUCGGCucuaGgUCCaGCCU- -5'
6360 3' -56.7 NC_001847.1 + 82091 0.74 0.428814
Target:  5'- uGGGCcAAGCgCGGGG-CCAGGcUCGGAg -3'
miRNA:   3'- cCCCGuUUCG-GCUCUaGGUCC-AGCCU- -5'
6360 3' -56.7 NC_001847.1 + 85774 0.66 0.865857
Target:  5'- gGGGGCAGcGGCCGAuGcggugcgcGUCgAGGgugCGGGc -3'
miRNA:   3'- -CCCCGUU-UCGGCU-C--------UAGgUCCa--GCCU- -5'
6360 3' -56.7 NC_001847.1 + 87915 0.66 0.865857
Target:  5'- aGGGGCGGGGCgUGGGG-CUGGGcgCGGc -3'
miRNA:   3'- -CCCCGUUUCG-GCUCUaGGUCCa-GCCu -5'
6360 3' -56.7 NC_001847.1 + 90745 0.66 0.880395
Target:  5'- cGGcGCGuGGCCGGGccCCGGGagCGGGa -3'
miRNA:   3'- cCC-CGUuUCGGCUCuaGGUCCa-GCCU- -5'
6360 3' -56.7 NC_001847.1 + 90860 0.69 0.694339
Target:  5'- cGGGGcCGGGGCUGGuGUCgAGGcCGGGg -3'
miRNA:   3'- -CCCC-GUUUCGGCUcUAGgUCCaGCCU- -5'
6360 3' -56.7 NC_001847.1 + 95346 0.69 0.714343
Target:  5'- gGGGGCGcAGCCagGGGAgcggggCCAGG-CGGc -3'
miRNA:   3'- -CCCCGUuUCGG--CUCUa-----GGUCCaGCCu -5'
6360 3' -56.7 NC_001847.1 + 95837 0.68 0.790836
Target:  5'- aGGGGCAAgccaGGCaCGGGcUCCAagcuaggcGGUCuGGAc -3'
miRNA:   3'- -CCCCGUU----UCG-GCUCuAGGU--------CCAG-CCU- -5'
6360 3' -56.7 NC_001847.1 + 96106 0.76 0.330575
Target:  5'- cGGGGcCGGAGCCGGaGUCgGGGcCGGAg -3'
miRNA:   3'- -CCCC-GUUUCGGCUcUAGgUCCaGCCU- -5'
6360 3' -56.7 NC_001847.1 + 96142 0.74 0.419986
Target:  5'- cGGGGcCGGAGCCG-GAaCCGGGgcCGGAa -3'
miRNA:   3'- -CCCC-GUUUCGGCuCUaGGUCCa-GCCU- -5'
6360 3' -56.7 NC_001847.1 + 96205 0.77 0.281393
Target:  5'- cGGGGcCGGAGUCGGGG-CCGGaGUCGGGg -3'
miRNA:   3'- -CCCC-GUUUCGGCUCUaGGUC-CAGCCU- -5'
6360 3' -56.7 NC_001847.1 + 96271 0.66 0.8575
Target:  5'- -uGGCGGGGCCG-GAaCCGGGgccguacUCGGGg -3'
miRNA:   3'- ccCCGUUUCGGCuCUaGGUCC-------AGCCU- -5'
6360 3' -56.7 NC_001847.1 + 98668 0.72 0.542283
Target:  5'- cGGGGcCGAAGCCGGGGccgaagCCGGGgccgaagcCGGGg -3'
miRNA:   3'- -CCCC-GUUUCGGCUCUa-----GGUCCa-------GCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.