miRNA display CGI


Results 21 - 40 of 98 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6360 3' -56.7 NC_001847.1 + 26508 0.68 0.772388
Target:  5'- cGGGCcu-GCCGGGcgCgGGGcCGGGg -3'
miRNA:   3'- cCCCGuuuCGGCUCuaGgUCCaGCCU- -5'
6360 3' -56.7 NC_001847.1 + 28112 0.68 0.790836
Target:  5'- cGGGGCcAGGaCCGAGG-CCGGcgacGUUGGGc -3'
miRNA:   3'- -CCCCGuUUC-GGCUCUaGGUC----CAGCCU- -5'
6360 3' -56.7 NC_001847.1 + 29802 0.67 0.834315
Target:  5'- cGGGaGCGccGCCG-GGUCCgAGGgaaGGAa -3'
miRNA:   3'- -CCC-CGUuuCGGCuCUAGG-UCCag-CCU- -5'
6360 3' -56.7 NC_001847.1 + 32038 0.67 0.825954
Target:  5'- cGGGGa--AGCCcccgcgaaAGGUCCGGGgcgCGGAg -3'
miRNA:   3'- -CCCCguuUCGGc-------UCUAGGUCCa--GCCU- -5'
6360 3' -56.7 NC_001847.1 + 32095 0.71 0.582432
Target:  5'- cGGGCGucgGGGCgCGAGGcCCGGGcUCGGGc -3'
miRNA:   3'- cCCCGU---UUCG-GCUCUaGGUCC-AGCCU- -5'
6360 3' -56.7 NC_001847.1 + 32138 0.7 0.663965
Target:  5'- gGGGGCGGGGgCGGGggCgGGGgcccCGGGg -3'
miRNA:   3'- -CCCCGUUUCgGCUCuaGgUCCa---GCCU- -5'
6360 3' -56.7 NC_001847.1 + 32214 0.74 0.420864
Target:  5'- cGGGCGGGGCCGGGGcgcggggcgccggacCCAGGggCGGAg -3'
miRNA:   3'- cCCCGUUUCGGCUCUa--------------GGUCCa-GCCU- -5'
6360 3' -56.7 NC_001847.1 + 32788 0.67 0.808714
Target:  5'- gGGGGgAGGGCCGGGGgcggaCGGcgcGUUGGAg -3'
miRNA:   3'- -CCCCgUUUCGGCUCUag---GUC---CAGCCU- -5'
6360 3' -56.7 NC_001847.1 + 32899 0.7 0.663965
Target:  5'- gGGGGCc-GGCgGGGAagCCGGGgccgCGGAc -3'
miRNA:   3'- -CCCCGuuUCGgCUCUa-GGUCCa---GCCU- -5'
6360 3' -56.7 NC_001847.1 + 32955 0.7 0.651739
Target:  5'- gGGGGCGgaggAGGCCGGGGaggccagaggcgCCGGGgCGGGc -3'
miRNA:   3'- -CCCCGU----UUCGGCUCUa-----------GGUCCaGCCU- -5'
6360 3' -56.7 NC_001847.1 + 33519 0.69 0.734068
Target:  5'- cGGGCGccGCCGcGGAggcgCCGGGcgCGGGc -3'
miRNA:   3'- cCCCGUuuCGGC-UCUa---GGUCCa-GCCU- -5'
6360 3' -56.7 NC_001847.1 + 42744 0.7 0.653778
Target:  5'- gGGcGGCGGGGCgGAcagcaGAUCCAGGaCGGc -3'
miRNA:   3'- -CC-CCGUUUCGgCU-----CUAGGUCCaGCCu -5'
6360 3' -56.7 NC_001847.1 + 45507 0.68 0.790836
Target:  5'- cGGGGCGGGcGCCGccg-CCGGGcggcgCGGAc -3'
miRNA:   3'- -CCCCGUUU-CGGCucuaGGUCCa----GCCU- -5'
6360 3' -56.7 NC_001847.1 + 45883 0.72 0.562261
Target:  5'- uGGGGCcccagAAAGCCGAGGaCCuGGcCGGu -3'
miRNA:   3'- -CCCCG-----UUUCGGCUCUaGGuCCaGCCu -5'
6360 3' -56.7 NC_001847.1 + 46919 0.66 0.880395
Target:  5'- gGGGGCGcgucGGGcCCGGGcUCCGGGcCGc- -3'
miRNA:   3'- -CCCCGU----UUC-GGCUCuAGGUCCaGCcu -5'
6360 3' -56.7 NC_001847.1 + 50045 0.66 0.85827
Target:  5'- cGGGGCGcgguggcGGCCGcGGGUCCGcgcgcGGcgCGGAc -3'
miRNA:   3'- -CCCCGUu------UCGGC-UCUAGGU-----CCa-GCCU- -5'
6360 3' -56.7 NC_001847.1 + 54497 0.66 0.873233
Target:  5'- -cGGCGgcGCCGGGG-CCGGGgUGGGg -3'
miRNA:   3'- ccCCGUuuCGGCUCUaGGUCCaGCCU- -5'
6360 3' -56.7 NC_001847.1 + 54527 0.71 0.582432
Target:  5'- uGGGGCGGGGCCG---UCCGGGggcgcagacggCGGGg -3'
miRNA:   3'- -CCCCGUUUCGGCucuAGGUCCa----------GCCU- -5'
6360 3' -56.7 NC_001847.1 + 58180 0.67 0.825954
Target:  5'- cGGGGUcgucAAAGCCGccuucggccagcAGGcgcUCCGGG-CGGAu -3'
miRNA:   3'- -CCCCG----UUUCGGC------------UCU---AGGUCCaGCCU- -5'
6360 3' -56.7 NC_001847.1 + 59697 0.67 0.834315
Target:  5'- aGGGCAAcagcAGCCaGGAcUCCGcGGUCGcGAu -3'
miRNA:   3'- cCCCGUU----UCGGcUCU-AGGU-CCAGC-CU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.