miRNA display CGI


Results 21 - 40 of 98 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6360 3' -56.7 NC_001847.1 + 8438 0.73 0.51278
Target:  5'- cGGGuCGGAGgCG-GcgCCGGGUCGGAg -3'
miRNA:   3'- cCCC-GUUUCgGCuCuaGGUCCAGCCU- -5'
6360 3' -56.7 NC_001847.1 + 111251 0.73 0.51278
Target:  5'- cGGGuCGGAGgCG-GcgCCGGGUCGGAg -3'
miRNA:   3'- cCCC-GUUUCgGCuCuaGGUCCAGCCU- -5'
6360 3' -56.7 NC_001847.1 + 12954 0.72 0.522545
Target:  5'- uGGGGCGgcGGGCCGGGGguggCCcGGUCGc- -3'
miRNA:   3'- -CCCCGU--UUCGGCUCUa---GGuCCAGCcu -5'
6360 3' -56.7 NC_001847.1 + 98668 0.72 0.542283
Target:  5'- cGGGGcCGAAGCCGGGGccgaagCCGGGgccgaagcCGGGg -3'
miRNA:   3'- -CCCC-GUUUCGGCUCUa-----GGUCCa-------GCCU- -5'
6360 3' -56.7 NC_001847.1 + 123492 0.72 0.552244
Target:  5'- uGGGGCcgccgcaagcGGGGCCGGGG-CCAGGgcugccgCGGGc -3'
miRNA:   3'- -CCCCG----------UUUCGGCUCUaGGUCCa------GCCU- -5'
6360 3' -56.7 NC_001847.1 + 45883 0.72 0.562261
Target:  5'- uGGGGCcccagAAAGCCGAGGaCCuGGcCGGu -3'
miRNA:   3'- -CCCCG-----UUUCGGCUCUaGGuCCaGCCu -5'
6360 3' -56.7 NC_001847.1 + 8605 0.71 0.572325
Target:  5'- aGGGGCGGcgcucGGCCGGGggCgGGGggaGGAg -3'
miRNA:   3'- -CCCCGUU-----UCGGCUCuaGgUCCag-CCU- -5'
6360 3' -56.7 NC_001847.1 + 111418 0.71 0.572325
Target:  5'- aGGGGCGGcgcucGGCCGGGggCgGGGggaGGAg -3'
miRNA:   3'- -CCCCGUU-----UCGGCUCuaGgUCCag-CCU- -5'
6360 3' -56.7 NC_001847.1 + 134908 0.71 0.582432
Target:  5'- cGGGCGucgGGGCgCGAGGcCCGGGcUCGGGc -3'
miRNA:   3'- cCCCGU---UUCG-GCUCUaGGUCC-AGCCU- -5'
6360 3' -56.7 NC_001847.1 + 121383 0.71 0.582432
Target:  5'- cGGGCAAGGCgGAGGaagaCCGGGggcaGGAg -3'
miRNA:   3'- cCCCGUUUCGgCUCUa---GGUCCag--CCU- -5'
6360 3' -56.7 NC_001847.1 + 54527 0.71 0.582432
Target:  5'- uGGGGCGGGGCCG---UCCGGGggcgcagacggCGGGg -3'
miRNA:   3'- -CCCCGUUUCGGCucuAGGUCCa----------GCCU- -5'
6360 3' -56.7 NC_001847.1 + 32095 0.71 0.582432
Target:  5'- cGGGCGucgGGGCgCGAGGcCCGGGcUCGGGc -3'
miRNA:   3'- cCCCGU---UUCG-GCUCUaGGUCC-AGCCU- -5'
6360 3' -56.7 NC_001847.1 + 17814 0.71 0.60886
Target:  5'- gGGGGCGAGGCCGccccccgccgCUAGGUCGc- -3'
miRNA:   3'- -CCCCGUUUCGGCucua------GGUCCAGCcu -5'
6360 3' -56.7 NC_001847.1 + 32955 0.7 0.651739
Target:  5'- gGGGGCGgaggAGGCCGGGGaggccagaggcgCCGGGgCGGGc -3'
miRNA:   3'- -CCCCGU----UUCGGCUCUa-----------GGUCCaGCCU- -5'
6360 3' -56.7 NC_001847.1 + 42744 0.7 0.653778
Target:  5'- gGGcGGCGGGGCgGAcagcaGAUCCAGGaCGGc -3'
miRNA:   3'- -CC-CCGUUUCGgCU-----CUAGGUCCaGCCu -5'
6360 3' -56.7 NC_001847.1 + 17086 0.7 0.653778
Target:  5'- -cGGCAAucuG-CGAGGUCgGGGUCGGGg -3'
miRNA:   3'- ccCCGUUu--CgGCUCUAGgUCCAGCCU- -5'
6360 3' -56.7 NC_001847.1 + 32138 0.7 0.663965
Target:  5'- gGGGGCGGGGgCGGGggCgGGGgcccCGGGg -3'
miRNA:   3'- -CCCCGUUUCgGCUCuaGgUCCa---GCCU- -5'
6360 3' -56.7 NC_001847.1 + 32899 0.7 0.663965
Target:  5'- gGGGGCc-GGCgGGGAagCCGGGgccgCGGAc -3'
miRNA:   3'- -CCCCGuuUCGgCUCUa-GGUCCa---GCCU- -5'
6360 3' -56.7 NC_001847.1 + 134951 0.7 0.663965
Target:  5'- gGGGGCGGGGgCGGGggCgGGGgcccCGGGg -3'
miRNA:   3'- -CCCCGUUUCgGCUCuaGgUCCa---GCCU- -5'
6360 3' -56.7 NC_001847.1 + 123561 0.7 0.663965
Target:  5'- cGGGGCuuGGGCCGGGG-CCgccgcgagcgGGGcCGGAc -3'
miRNA:   3'- -CCCCGu-UUCGGCUCUaGG----------UCCaGCCU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.