miRNA display CGI


Results 1 - 20 of 98 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6360 3' -56.7 NC_001847.1 + 119454 1.11 0.001736
Target:  5'- gGGGGCAAAGCCGAGAUCCAGGUCGGAg -3'
miRNA:   3'- -CCCCGUUUCGGCUCUAGGUCCAGCCU- -5'
6360 3' -56.7 NC_001847.1 + 125239 0.81 0.172735
Target:  5'- gGGGGCGGGGcCCGAGA-CCAcgcGGUCGGGc -3'
miRNA:   3'- -CCCCGUUUC-GGCUCUaGGU---CCAGCCU- -5'
6360 3' -56.7 NC_001847.1 + 22426 0.81 0.172735
Target:  5'- gGGGGCGGGGcCCGAGA-CCAcgcGGUCGGGc -3'
miRNA:   3'- -CCCCGUUUC-GGCUCUaGGU---CCAGCCU- -5'
6360 3' -56.7 NC_001847.1 + 101157 0.81 0.17714
Target:  5'- uGGGGcCGGGGCCGGGGcCgGGGUCGGGg -3'
miRNA:   3'- -CCCC-GUUUCGGCUCUaGgUCCAGCCU- -5'
6360 3' -56.7 NC_001847.1 + 118908 0.8 0.186251
Target:  5'- cGGGGcCGGGGCCGAGG-CCGGGacgCGGAg -3'
miRNA:   3'- -CCCC-GUUUCGGCUCUaGGUCCa--GCCU- -5'
6360 3' -56.7 NC_001847.1 + 98728 0.79 0.238198
Target:  5'- cGGGGcCGAAGCCGGGG-CCGGGgcCGGGg -3'
miRNA:   3'- -CCCC-GUUUCGGCUCUaGGUCCa-GCCU- -5'
6360 3' -56.7 NC_001847.1 + 96205 0.77 0.281393
Target:  5'- cGGGGcCGGAGUCGGGG-CCGGaGUCGGGg -3'
miRNA:   3'- -CCCC-GUUUCGGCUCUaGGUC-CAGCCU- -5'
6360 3' -56.7 NC_001847.1 + 96106 0.76 0.330575
Target:  5'- cGGGGcCGGAGCCGGaGUCgGGGcCGGAg -3'
miRNA:   3'- -CCCC-GUUUCGGCUcUAGgUCCaGCCU- -5'
6360 3' -56.7 NC_001847.1 + 118831 0.75 0.401811
Target:  5'- aGGGcGCGGAGCCGAGGgcgcgagcgcgagUaagaCCGGGUUGGAu -3'
miRNA:   3'- -CCC-CGUUUCGGCUCU-------------A----GGUCCAGCCU- -5'
6360 3' -56.7 NC_001847.1 + 96142 0.74 0.419986
Target:  5'- cGGGGcCGGAGCCG-GAaCCGGGgcCGGAa -3'
miRNA:   3'- -CCCC-GUUUCGGCuCUaGGUCCa-GCCU- -5'
6360 3' -56.7 NC_001847.1 + 100887 0.74 0.419986
Target:  5'- aGGGGCGcGGCCGGcGGgagaCgGGGUCGGGg -3'
miRNA:   3'- -CCCCGUuUCGGCU-CUa---GgUCCAGCCU- -5'
6360 3' -56.7 NC_001847.1 + 32214 0.74 0.420864
Target:  5'- cGGGCGGGGCCGGGGcgcggggcgccggacCCAGGggCGGAg -3'
miRNA:   3'- cCCCGUUUCGGCUCUa--------------GGUCCa-GCCU- -5'
6360 3' -56.7 NC_001847.1 + 135027 0.74 0.420864
Target:  5'- cGGGCGGGGCCGGGGcgcggggcgccggacCCAGGggCGGAg -3'
miRNA:   3'- cCCCGUUUCGGCUCUa--------------GGUCCa-GCCU- -5'
6360 3' -56.7 NC_001847.1 + 99791 0.74 0.428814
Target:  5'- gGGGGCAgcGCCuGuGGUgCgGGGUCGGAg -3'
miRNA:   3'- -CCCCGUuuCGG-CuCUA-GgUCCAGCCU- -5'
6360 3' -56.7 NC_001847.1 + 82091 0.74 0.428814
Target:  5'- uGGGCcAAGCgCGGGG-CCAGGcUCGGAg -3'
miRNA:   3'- cCCCGuUUCG-GCUCUaGGUCC-AGCCU- -5'
6360 3' -56.7 NC_001847.1 + 101073 0.74 0.43775
Target:  5'- cGGGGCc--GCCGcgGGggCCGGGUCGGc -3'
miRNA:   3'- -CCCCGuuuCGGC--UCuaGGUCCAGCCu -5'
6360 3' -56.7 NC_001847.1 + 104959 0.74 0.455938
Target:  5'- -aGGCGAGcGCCGGGcgCCAGGgcUCGGGg -3'
miRNA:   3'- ccCCGUUU-CGGCUCuaGGUCC--AGCCU- -5'
6360 3' -56.7 NC_001847.1 + 2146 0.74 0.455938
Target:  5'- -aGGCGAGcGCCGGGcgCCAGGgcUCGGGg -3'
miRNA:   3'- ccCCGUUU-CGGCUCuaGGUCC--AGCCU- -5'
6360 3' -56.7 NC_001847.1 + 102684 0.73 0.483959
Target:  5'- gGGGGCGGGGCgGGGGcagggcgCCGGG-CGGGc -3'
miRNA:   3'- -CCCCGUUUCGgCUCUa------GGUCCaGCCU- -5'
6360 3' -56.7 NC_001847.1 + 100751 0.73 0.503091
Target:  5'- ---uCGGGGCCGGGGUCCAGGUCGc- -3'
miRNA:   3'- ccccGUUUCGGCUCUAGGUCCAGCcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.