miRNA display CGI


Results 1 - 20 of 98 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6360 3' -56.7 NC_001847.1 + 125239 0.81 0.172735
Target:  5'- gGGGGCGGGGcCCGAGA-CCAcgcGGUCGGGc -3'
miRNA:   3'- -CCCCGUUUC-GGCUCUaGGU---CCAGCCU- -5'
6360 3' -56.7 NC_001847.1 + 134951 0.7 0.663965
Target:  5'- gGGGGCGGGGgCGGGggCgGGGgcccCGGGg -3'
miRNA:   3'- -CCCCGUUUCgGCUCuaGgUCCa---GCCU- -5'
6360 3' -56.7 NC_001847.1 + 33519 0.69 0.734068
Target:  5'- cGGGCGccGCCGcGGAggcgCCGGGcgCGGGc -3'
miRNA:   3'- cCCCGUuuCGGC-UCUa---GGUCCa-GCCU- -5'
6360 3' -56.7 NC_001847.1 + 75663 0.66 0.880395
Target:  5'- cGGGCGuuGCuCGuGAaggCCGGGUCGa- -3'
miRNA:   3'- cCCCGUuuCG-GCuCUa--GGUCCAGCcu -5'
6360 3' -56.7 NC_001847.1 + 135027 0.74 0.420864
Target:  5'- cGGGCGGGGCCGGGGcgcggggcgccggacCCAGGggCGGAg -3'
miRNA:   3'- cCCCGUUUCGGCUCUa--------------GGUCCa-GCCU- -5'
6360 3' -56.7 NC_001847.1 + 99791 0.74 0.428814
Target:  5'- gGGGGCAgcGCCuGuGGUgCgGGGUCGGAg -3'
miRNA:   3'- -CCCCGUuuCGG-CuCUA-GgUCCAGCCU- -5'
6360 3' -56.7 NC_001847.1 + 104959 0.74 0.455938
Target:  5'- -aGGCGAGcGCCGGGcgCCAGGgcUCGGGg -3'
miRNA:   3'- ccCCGUUU-CGGCUCuaGGUCC--AGCCU- -5'
6360 3' -56.7 NC_001847.1 + 102684 0.73 0.483959
Target:  5'- gGGGGCGGGGCgGGGGcagggcgCCGGG-CGGGc -3'
miRNA:   3'- -CCCCGUUUCGgCUCUa------GGUCCaGCCU- -5'
6360 3' -56.7 NC_001847.1 + 98668 0.72 0.542283
Target:  5'- cGGGGcCGAAGCCGGGGccgaagCCGGGgccgaagcCGGGg -3'
miRNA:   3'- -CCCC-GUUUCGGCUCUa-----GGUCCa-------GCCU- -5'
6360 3' -56.7 NC_001847.1 + 17814 0.71 0.60886
Target:  5'- gGGGGCGAGGCCGccccccgccgCUAGGUCGc- -3'
miRNA:   3'- -CCCCGUUUCGGCucua------GGUCCAGCcu -5'
6360 3' -56.7 NC_001847.1 + 54527 0.71 0.582432
Target:  5'- uGGGGCGGGGCCG---UCCGGGggcgcagacggCGGGg -3'
miRNA:   3'- -CCCCGUUUCGGCucuAGGUCCa----------GCCU- -5'
6360 3' -56.7 NC_001847.1 + 111251 0.73 0.51278
Target:  5'- cGGGuCGGAGgCG-GcgCCGGGUCGGAg -3'
miRNA:   3'- cCCC-GUUUCgGCuCuaGGUCCAGCCU- -5'
6360 3' -56.7 NC_001847.1 + 101157 0.81 0.17714
Target:  5'- uGGGGcCGGGGCCGGGGcCgGGGUCGGGg -3'
miRNA:   3'- -CCCC-GUUUCGGCUCUaGgUCCAGCCU- -5'
6360 3' -56.7 NC_001847.1 + 121383 0.71 0.582432
Target:  5'- cGGGCAAGGCgGAGGaagaCCGGGggcaGGAg -3'
miRNA:   3'- cCCCGUUUCGgCUCUa---GGUCCag--CCU- -5'
6360 3' -56.7 NC_001847.1 + 98728 0.79 0.238198
Target:  5'- cGGGGcCGAAGCCGGGG-CCGGGgcCGGGg -3'
miRNA:   3'- -CCCC-GUUUCGGCUCUaGGUCCa-GCCU- -5'
6360 3' -56.7 NC_001847.1 + 100751 0.73 0.503091
Target:  5'- ---uCGGGGCCGGGGUCCAGGUCGc- -3'
miRNA:   3'- ccccGUUUCGGCUCUAGGUCCAGCcu -5'
6360 3' -56.7 NC_001847.1 + 134908 0.71 0.582432
Target:  5'- cGGGCGucgGGGCgCGAGGcCCGGGcUCGGGc -3'
miRNA:   3'- cCCCGU---UUCG-GCUCUaGGUCC-AGCCU- -5'
6360 3' -56.7 NC_001847.1 + 124220 0.7 0.684254
Target:  5'- cGGGCc-GGCCGAgGAUUCGGGcCGGc -3'
miRNA:   3'- cCCCGuuUCGGCU-CUAGGUCCaGCCu -5'
6360 3' -56.7 NC_001847.1 + 100887 0.74 0.419986
Target:  5'- aGGGGCGcGGCCGGcGGgagaCgGGGUCGGGg -3'
miRNA:   3'- -CCCCGUuUCGGCU-CUa---GgUCCAGCCU- -5'
6360 3' -56.7 NC_001847.1 + 101073 0.74 0.43775
Target:  5'- cGGGGCc--GCCGcgGGggCCGGGUCGGc -3'
miRNA:   3'- -CCCCGuuuCGGC--UCuaGGUCCAGCCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.