miRNA display CGI


Results 1 - 20 of 98 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6360 3' -56.7 NC_001847.1 + 23292 0.68 0.781678
Target:  5'- gGGGGCGGAGCaCaGGAgCuCGGGUgGGGu -3'
miRNA:   3'- -CCCCGUUUCG-GcUCUaG-GUCCAgCCU- -5'
6360 3' -56.7 NC_001847.1 + 59697 0.67 0.834315
Target:  5'- aGGGCAAcagcAGCCaGGAcUCCGcGGUCGcGAu -3'
miRNA:   3'- cCCCGUU----UCGGcUCU-AGGU-CCAGC-CU- -5'
6360 3' -56.7 NC_001847.1 + 58180 0.67 0.825954
Target:  5'- cGGGGUcgucAAAGCCGccuucggccagcAGGcgcUCCGGG-CGGAu -3'
miRNA:   3'- -CCCCG----UUUCGGC------------UCU---AGGUCCaGCCU- -5'
6360 3' -56.7 NC_001847.1 + 125384 0.67 0.817418
Target:  5'- gGGGGC---GCgCGAGGUCgAGGU-GGAc -3'
miRNA:   3'- -CCCCGuuuCG-GCUCUAGgUCCAgCCU- -5'
6360 3' -56.7 NC_001847.1 + 32788 0.67 0.808714
Target:  5'- gGGGGgAGGGCCGGGGgcggaCGGcgcGUUGGAg -3'
miRNA:   3'- -CCCCgUUUCGGCUCUag---GUC---CAGCCU- -5'
6360 3' -56.7 NC_001847.1 + 76815 0.67 0.79985
Target:  5'- gGGGGgAGGGCCacaGAGA-CCGGuGcCGGAg -3'
miRNA:   3'- -CCCCgUUUCGG---CUCUaGGUC-CaGCCU- -5'
6360 3' -56.7 NC_001847.1 + 28112 0.68 0.790836
Target:  5'- cGGGGCcAGGaCCGAGG-CCGGcgacGUUGGGc -3'
miRNA:   3'- -CCCCGuUUC-GGCUCUaGGUC----CAGCCU- -5'
6360 3' -56.7 NC_001847.1 + 95837 0.68 0.790836
Target:  5'- aGGGGCAAgccaGGCaCGGGcUCCAagcuaggcGGUCuGGAc -3'
miRNA:   3'- -CCCCGUU----UCG-GCUCuAGGU--------CCAG-CCU- -5'
6360 3' -56.7 NC_001847.1 + 8463 0.68 0.790836
Target:  5'- aGGcGGCGccGGGCCGGGGgcggcgcucggCCGGGggCGGGg -3'
miRNA:   3'- -CC-CCGU--UUCGGCUCUa----------GGUCCa-GCCU- -5'
6360 3' -56.7 NC_001847.1 + 29802 0.67 0.834315
Target:  5'- cGGGaGCGccGCCG-GGUCCgAGGgaaGGAa -3'
miRNA:   3'- -CCC-CGUuuCGGCuCUAGG-UCCag-CCU- -5'
6360 3' -56.7 NC_001847.1 + 108638 0.67 0.834315
Target:  5'- cGGGCGAcGCUGcAGAaguggCCGGGgccgCGGAc -3'
miRNA:   3'- cCCCGUUuCGGC-UCUa----GGUCCa---GCCU- -5'
6360 3' -56.7 NC_001847.1 + 60052 0.67 0.842493
Target:  5'- cGGGGCGccGCCGAcGAUCUAauGGU-GGc -3'
miRNA:   3'- -CCCCGUuuCGGCU-CUAGGU--CCAgCCu -5'
6360 3' -56.7 NC_001847.1 + 46919 0.66 0.880395
Target:  5'- gGGGGCGcgucGGGcCCGGGcUCCGGGcCGc- -3'
miRNA:   3'- -CCCCGU----UUC-GGCUCuAGGUCCaGCcu -5'
6360 3' -56.7 NC_001847.1 + 7612 0.66 0.880395
Target:  5'- cGGGGUggGGUgGGGGggUGGGUgGGGg -3'
miRNA:   3'- -CCCCGuuUCGgCUCUagGUCCAgCCU- -5'
6360 3' -56.7 NC_001847.1 + 117043 0.66 0.865857
Target:  5'- gGGGGCuc-GCCGAGG---AGG-CGGAa -3'
miRNA:   3'- -CCCCGuuuCGGCUCUaggUCCaGCCU- -5'
6360 3' -56.7 NC_001847.1 + 21892 0.66 0.861329
Target:  5'- uGGGCGAcgagacgaaggagacGGCCGAGG-CCGcGGgcgaggCGGAg -3'
miRNA:   3'- cCCCGUU---------------UCGGCUCUaGGU-CCa-----GCCU- -5'
6360 3' -56.7 NC_001847.1 + 68984 0.66 0.85827
Target:  5'- cGGGCAcGGCCGAGAgcacgUCCAGcaCGu- -3'
miRNA:   3'- cCCCGUuUCGGCUCU-----AGGUCcaGCcu -5'
6360 3' -56.7 NC_001847.1 + 96271 0.66 0.8575
Target:  5'- -uGGCGGGGCCG-GAaCCGGGgccguacUCGGGg -3'
miRNA:   3'- ccCCGUUUCGGCuCUaGGUCC-------AGCCU- -5'
6360 3' -56.7 NC_001847.1 + 81242 0.67 0.842493
Target:  5'- cGGGCGGGGCCGucg-CgAGGaCGGGg -3'
miRNA:   3'- cCCCGUUUCGGCucuaGgUCCaGCCU- -5'
6360 3' -56.7 NC_001847.1 + 100010 0.67 0.842493
Target:  5'- -uGGCGA-GCCGAGGcacggccgCCAGGUCGc- -3'
miRNA:   3'- ccCCGUUuCGGCUCUa-------GGUCCAGCcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.