miRNA display CGI


Results 61 - 80 of 283 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6360 5' -65.8 NC_001847.1 + 77207 0.73 0.165769
Target:  5'- uGCCCgcgacgGAGCCgCGGGCcgCCGGGCCCGGa -3'
miRNA:   3'- uCGGG------CUCGG-GCUCG--GGCUCGGGCUc -5'
6360 5' -65.8 NC_001847.1 + 131070 0.73 0.169787
Target:  5'- gAGgCCGAGgCCGAGgCUGAGgCCGGGa -3'
miRNA:   3'- -UCgGGCUCgGGCUCgGGCUCgGGCUC- -5'
6360 5' -65.8 NC_001847.1 + 28257 0.73 0.169787
Target:  5'- gAGgCCGAGgCCGAGgCUGAGgCCGGGa -3'
miRNA:   3'- -UCgGGCUCgGGCUCgGGCUCgGGCUC- -5'
6360 5' -65.8 NC_001847.1 + 34309 0.73 0.169787
Target:  5'- cGGCCCuGGCCgGAgccGCCCGGG-CCGAGg -3'
miRNA:   3'- -UCGGGcUCGGgCU---CGGGCUCgGGCUC- -5'
6360 5' -65.8 NC_001847.1 + 109587 0.72 0.173892
Target:  5'- cGgCCGAGCUCGcGCUCGuGUCCGAGg -3'
miRNA:   3'- uCgGGCUCGGGCuCGGGCuCGGGCUC- -5'
6360 5' -65.8 NC_001847.1 + 52580 0.72 0.178085
Target:  5'- gAGCUCGAGgcggcggCCGAGgCCGAGCCCGcGGg -3'
miRNA:   3'- -UCGGGCUCg------GGCUCgGGCUCGGGC-UC- -5'
6360 5' -65.8 NC_001847.1 + 98104 0.72 0.182368
Target:  5'- cAGCCCaGGCuaGAGUgCGAGCCCGGc -3'
miRNA:   3'- -UCGGGcUCGggCUCGgGCUCGGGCUc -5'
6360 5' -65.8 NC_001847.1 + 79 0.72 0.182368
Target:  5'- gGGCCCGGGCCCGcucugggcuccGCCCcuGGGUCCGGc -3'
miRNA:   3'- -UCGGGCUCGGGCu----------CGGG--CUCGGGCUc -5'
6360 5' -65.8 NC_001847.1 + 9950 0.72 0.182368
Target:  5'- cGGCCCGGGCgccuucugccCCGAGgaCUGGGCcCCGAGg -3'
miRNA:   3'- -UCGGGCUCG----------GGCUCg-GGCUCG-GGCUC- -5'
6360 5' -65.8 NC_001847.1 + 102892 0.72 0.182368
Target:  5'- gGGCCCGGGCCCGcucugggcuccGCCCcuGGGUCCGGc -3'
miRNA:   3'- -UCGGGCUCGGGCu----------CGGG--CUCGGGCUc -5'
6360 5' -65.8 NC_001847.1 + 125208 0.72 0.191208
Target:  5'- cGCCCGGGCCgCGGcgagcgugcucGUCCGcgggggcggGGCCCGAGa -3'
miRNA:   3'- uCGGGCUCGG-GCU-----------CGGGC---------UCGGGCUC- -5'
6360 5' -65.8 NC_001847.1 + 22395 0.72 0.191208
Target:  5'- cGCCCGGGCCgCGGcgagcgugcucGUCCGcgggggcggGGCCCGAGa -3'
miRNA:   3'- uCGGGCUCGG-GCU-----------CGGGC---------UCGGGCUC- -5'
6360 5' -65.8 NC_001847.1 + 127984 0.72 0.191208
Target:  5'- cGCCCGGGCgagCGAGCgCGAcacGCCCGAa -3'
miRNA:   3'- uCGGGCUCGg--GCUCGgGCU---CGGGCUc -5'
6360 5' -65.8 NC_001847.1 + 55885 0.72 0.191208
Target:  5'- cGCCCGcGGCCCGAcGCCgGcuagcAGCUCGGGg -3'
miRNA:   3'- uCGGGC-UCGGGCU-CGGgC-----UCGGGCUC- -5'
6360 5' -65.8 NC_001847.1 + 25171 0.72 0.191208
Target:  5'- cGCCCGGGCgagCGAGCgCGAcacGCCCGAa -3'
miRNA:   3'- uCGGGCUCGg--GCUCGgGCU---CGGGCUc -5'
6360 5' -65.8 NC_001847.1 + 16258 0.72 0.195767
Target:  5'- cGGCCCcGGcCCCGuGCaCCGAgcGCCCGGGu -3'
miRNA:   3'- -UCGGGcUC-GGGCuCG-GGCU--CGGGCUC- -5'
6360 5' -65.8 NC_001847.1 + 29786 0.72 0.195767
Target:  5'- cGCCCcGGCCCGgcGGCgggagcgccgCCGGGUCCGAGg -3'
miRNA:   3'- uCGGGcUCGGGC--UCG----------GGCUCGGGCUC- -5'
6360 5' -65.8 NC_001847.1 + 96213 0.72 0.195767
Target:  5'- gAGUCgGGGCCgGAGUCgGGGCCgGAGu -3'
miRNA:   3'- -UCGGgCUCGGgCUCGGgCUCGGgCUC- -5'
6360 5' -65.8 NC_001847.1 + 132599 0.72 0.195767
Target:  5'- cGCCCcGGCCCGgcGGCgggagcgccgCCGGGUCCGAGg -3'
miRNA:   3'- uCGGGcUCGGGC--UCG----------GGCUCGGGCUC- -5'
6360 5' -65.8 NC_001847.1 + 38104 0.72 0.200421
Target:  5'- cAGCCCGGacgccgcuGCCCGGcggguGCgCCGGGCaCCGAGu -3'
miRNA:   3'- -UCGGGCU--------CGGGCU-----CG-GGCUCG-GGCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.