miRNA display CGI


Results 41 - 60 of 283 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6360 5' -65.8 NC_001847.1 + 113354 0.75 0.11501
Target:  5'- gGGCCCGGggacccgcGCCCGgccGGCgCCGGGCCCGGc -3'
miRNA:   3'- -UCGGGCU--------CGGGC---UCG-GGCUCGGGCUc -5'
6360 5' -65.8 NC_001847.1 + 135 0.75 0.11501
Target:  5'- cGCCCGcgGGCCuCGGGCCCcGGCCgGGGg -3'
miRNA:   3'- uCGGGC--UCGG-GCUCGGGcUCGGgCUC- -5'
6360 5' -65.8 NC_001847.1 + 102948 0.75 0.11501
Target:  5'- cGCCCGcgGGCCuCGGGCCCcGGCCgGGGg -3'
miRNA:   3'- uCGGGC--UCGG-GCUCGGGcUCGGgCUC- -5'
6360 5' -65.8 NC_001847.1 + 55577 0.75 0.117886
Target:  5'- aGGCCgCGAGCCCGGcGCCCcccgcGAGCCCcAGc -3'
miRNA:   3'- -UCGG-GCUCGGGCU-CGGG-----CUCGGGcUC- -5'
6360 5' -65.8 NC_001847.1 + 118898 0.75 0.117886
Target:  5'- gGGCCgGGGCCgGGGCCgGGG-CCGAGg -3'
miRNA:   3'- -UCGGgCUCGGgCUCGGgCUCgGGCUC- -5'
6360 5' -65.8 NC_001847.1 + 79375 0.75 0.12384
Target:  5'- cGCCCGAGCCCGuacucagggcacGGCCgcgCGGGCgCGAGc -3'
miRNA:   3'- uCGGGCUCGGGC------------UCGG---GCUCGgGCUC- -5'
6360 5' -65.8 NC_001847.1 + 131145 0.74 0.12692
Target:  5'- gGGCCCGGcGCCCcgcgGGGCCgCGcGCCCGGGc -3'
miRNA:   3'- -UCGGGCU-CGGG----CUCGG-GCuCGGGCUC- -5'
6360 5' -65.8 NC_001847.1 + 28332 0.74 0.12692
Target:  5'- gGGCCCGGcGCCCcgcgGGGCCgCGcGCCCGGGc -3'
miRNA:   3'- -UCGGGCU-CGGG----CUCGG-GCuCGGGCUC- -5'
6360 5' -65.8 NC_001847.1 + 116416 0.74 0.130071
Target:  5'- gGGcCCCGGGCCgCGcGCuuGGGCUCGAGg -3'
miRNA:   3'- -UC-GGGCUCGG-GCuCGggCUCGGGCUC- -5'
6360 5' -65.8 NC_001847.1 + 101153 0.74 0.130071
Target:  5'- gGGCUgGGGCCgGGGCCgGGGCCgGGGu -3'
miRNA:   3'- -UCGGgCUCGGgCUCGGgCUCGGgCUC- -5'
6360 5' -65.8 NC_001847.1 + 57905 0.74 0.132969
Target:  5'- cGCCCGcgcgaccgcgccaAGUCCGGGCCCGgcGGCCCGcGg -3'
miRNA:   3'- uCGGGC-------------UCGGGCUCGGGC--UCGGGCuC- -5'
6360 5' -65.8 NC_001847.1 + 53035 0.74 0.133294
Target:  5'- cGCUCGGGCCUcGGCuCCGAGCCUGGc -3'
miRNA:   3'- uCGGGCUCGGGcUCG-GGCUCGGGCUc -5'
6360 5' -65.8 NC_001847.1 + 59439 0.74 0.14341
Target:  5'- cGGCCCGcGGCCCGuGGCCCGAGCg---- -3'
miRNA:   3'- -UCGGGC-UCGGGC-UCGGGCUCGggcuc -5'
6360 5' -65.8 NC_001847.1 + 95957 0.74 0.146935
Target:  5'- cGCCCGcuCCCaGGGCCUGAGCCuCGAc -3'
miRNA:   3'- uCGGGCucGGG-CUCGGGCUCGG-GCUc -5'
6360 5' -65.8 NC_001847.1 + 75121 0.73 0.150538
Target:  5'- uGCCCGAgaagGCCCGGGCCCc-GCCgGGGc -3'
miRNA:   3'- uCGGGCU----CGGGCUCGGGcuCGGgCUC- -5'
6360 5' -65.8 NC_001847.1 + 46924 0.73 0.150538
Target:  5'- cGCgUCGGGCCCGGGCuCCGGGCCgCGuGc -3'
miRNA:   3'- uCG-GGCUCGGGCUCG-GGCUCGG-GCuC- -5'
6360 5' -65.8 NC_001847.1 + 18720 0.73 0.154222
Target:  5'- cGCCCucGAGCCCaAGCgCGcGGCCCGGGg -3'
miRNA:   3'- uCGGG--CUCGGGcUCGgGC-UCGGGCUC- -5'
6360 5' -65.8 NC_001847.1 + 34533 0.73 0.154222
Target:  5'- cGCCaGGGCCCGAGCCUG-GCCgGGc -3'
miRNA:   3'- uCGGgCUCGGGCUCGGGCuCGGgCUc -5'
6360 5' -65.8 NC_001847.1 + 54434 0.73 0.157228
Target:  5'- cGGCCCGGGCagagaCGAGgggggcggggaCGAGCCCGAGg -3'
miRNA:   3'- -UCGGGCUCGg----GCUCgg---------GCUCGGGCUC- -5'
6360 5' -65.8 NC_001847.1 + 115203 0.73 0.165769
Target:  5'- aGGgCCGAGCCCucGCgCG-GCCCGAGu -3'
miRNA:   3'- -UCgGGCUCGGGcuCGgGCuCGGGCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.