miRNA display CGI


Results 41 - 60 of 283 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6360 5' -65.8 NC_001847.1 + 31858 0.66 0.42956
Target:  5'- cGCCCGGGCUCGccGGCguugcugccggCgGAGCCCGu- -3'
miRNA:   3'- uCGGGCUCGGGC--UCG-----------GgCUCGGGCuc -5'
6360 5' -65.8 NC_001847.1 + 16457 0.66 0.42956
Target:  5'- cAGCCgGGGCUgcGGCCCG-GCCCa-- -3'
miRNA:   3'- -UCGGgCUCGGgcUCGGGCuCGGGcuc -5'
6360 5' -65.8 NC_001847.1 + 38761 0.66 0.42956
Target:  5'- uGGCggCGGGCCCGuGCUgGAGCaCGAGc -3'
miRNA:   3'- -UCGg-GCUCGGGCuCGGgCUCGgGCUC- -5'
6360 5' -65.8 NC_001847.1 + 123563 0.66 0.42956
Target:  5'- gGGCuuGGGCCgGGGCCgccgCGAGCggggccggaCCGGGc -3'
miRNA:   3'- -UCGggCUCGGgCUCGG----GCUCG---------GGCUC- -5'
6360 5' -65.8 NC_001847.1 + 134784 0.66 0.42119
Target:  5'- cGCggggCGGGCCCcgGGGCgCGaAGCCCGGGa -3'
miRNA:   3'- uCGg---GCUCGGG--CUCGgGC-UCGGGCUC- -5'
6360 5' -65.8 NC_001847.1 + 63755 0.66 0.42119
Target:  5'- cGCCUGgcGGCgCGGGCCa-GGCCCGGa -3'
miRNA:   3'- uCGGGC--UCGgGCUCGGgcUCGGGCUc -5'
6360 5' -65.8 NC_001847.1 + 37179 0.66 0.42119
Target:  5'- cAGCCuCGcGCCgggaGAGCCCGGugcgaggcGCCCGGu -3'
miRNA:   3'- -UCGG-GCuCGGg---CUCGGGCU--------CGGGCUc -5'
6360 5' -65.8 NC_001847.1 + 59733 0.66 0.42119
Target:  5'- cGCUCGGcGUCCG-GCgCGAGCUCGAc -3'
miRNA:   3'- uCGGGCU-CGGGCuCGgGCUCGGGCUc -5'
6360 5' -65.8 NC_001847.1 + 31971 0.66 0.42119
Target:  5'- cGCggggCGGGCCCcgGGGCgCGaAGCCCGGGa -3'
miRNA:   3'- uCGg---GCUCGGG--CUCGgGC-UCGGGCUC- -5'
6360 5' -65.8 NC_001847.1 + 11268 0.66 0.42119
Target:  5'- gGGCCCc-GCCCcaGGGCCUcaGGGCCgGGGg -3'
miRNA:   3'- -UCGGGcuCGGG--CUCGGG--CUCGGgCUC- -5'
6360 5' -65.8 NC_001847.1 + 114081 0.66 0.42119
Target:  5'- gGGCCCc-GCCCcaGGGCCUcaGGGCCgGGGg -3'
miRNA:   3'- -UCGGGcuCGGG--CUCGGG--CUCGGgCUC- -5'
6360 5' -65.8 NC_001847.1 + 29457 0.67 0.412919
Target:  5'- cGCCCGcGgCCGAagcgccGCCCGcGgCCGAGg -3'
miRNA:   3'- uCGGGCuCgGGCU------CGGGCuCgGGCUC- -5'
6360 5' -65.8 NC_001847.1 + 8827 0.67 0.412919
Target:  5'- -aCCCGAGCUCGAGCgaacggcuuccUCGAGCUCa-- -3'
miRNA:   3'- ucGGGCUCGGGCUCG-----------GGCUCGGGcuc -5'
6360 5' -65.8 NC_001847.1 + 117208 0.67 0.412919
Target:  5'- cGCCgGAGCCgccGUCCGuGUCCGAGc -3'
miRNA:   3'- uCGGgCUCGGgcuCGGGCuCGGGCUC- -5'
6360 5' -65.8 NC_001847.1 + 66676 0.67 0.412919
Target:  5'- cGCCCGcgcggcggGGCCCcGGCCgCGGGCgCGGa -3'
miRNA:   3'- uCGGGC--------UCGGGcUCGG-GCUCGgGCUc -5'
6360 5' -65.8 NC_001847.1 + 55750 0.67 0.412919
Target:  5'- cGGCUCGcGCCCGcGCggCCGuGCCCuGAGu -3'
miRNA:   3'- -UCGGGCuCGGGCuCG--GGCuCGGG-CUC- -5'
6360 5' -65.8 NC_001847.1 + 57296 0.67 0.412919
Target:  5'- gAGCugcugCCGGGCCgCGAGCUCgugGAGCCCu-- -3'
miRNA:   3'- -UCG-----GGCUCGG-GCUCGGG---CUCGGGcuc -5'
6360 5' -65.8 NC_001847.1 + 99044 0.67 0.412919
Target:  5'- cGCCCGcggauaaaaauGCCCGccaGGCCCGGGgCCGc- -3'
miRNA:   3'- uCGGGCu----------CGGGC---UCGGGCUCgGGCuc -5'
6360 5' -65.8 NC_001847.1 + 111640 0.67 0.412919
Target:  5'- -aCCCGAGCUCGAGCgaacggcuuccUCGAGCUCa-- -3'
miRNA:   3'- ucGGGCUCGGGCUCG-----------GGCUCGGGcuc -5'
6360 5' -65.8 NC_001847.1 + 77496 0.67 0.410458
Target:  5'- uGCCCGAcggcGCCCaGGCCCugaaagaaguuggcGAGCCCu-- -3'
miRNA:   3'- uCGGGCU----CGGGcUCGGG--------------CUCGGGcuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.