miRNA display CGI


Results 41 - 60 of 283 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6360 5' -65.8 NC_001847.1 + 18377 0.68 0.342473
Target:  5'- gGGCCCGAuGCCuCGGcguccucGCCCugcGGGCCCGcGGg -3'
miRNA:   3'- -UCGGGCU-CGG-GCU-------CGGG---CUCGGGC-UC- -5'
6360 5' -65.8 NC_001847.1 + 18720 0.73 0.154222
Target:  5'- cGCCCucGAGCCCaAGCgCGcGGCCCGGGg -3'
miRNA:   3'- uCGGG--CUCGGGcUCGgGC-UCGGGCUC- -5'
6360 5' -65.8 NC_001847.1 + 19005 0.66 0.438026
Target:  5'- cGCCuCGGGCCgCGcGCCCcagcGCCCGGc -3'
miRNA:   3'- uCGG-GCUCGG-GCuCGGGcu--CGGGCUc -5'
6360 5' -65.8 NC_001847.1 + 19608 0.89 0.011106
Target:  5'- -aUCCGGGCCCGAGCUCGGGCCCGGGg -3'
miRNA:   3'- ucGGGCUCGGGCUCGGGCUCGGGCUC- -5'
6360 5' -65.8 NC_001847.1 + 19854 0.69 0.276163
Target:  5'- uGGCCCGcGCCCGggGGCgCCGgcuuAGCCCGc- -3'
miRNA:   3'- -UCGGGCuCGGGC--UCG-GGC----UCGGGCuc -5'
6360 5' -65.8 NC_001847.1 + 21060 0.7 0.258202
Target:  5'- cGGCCCuGAgGCCCuGGGgCgGGGCCCGAc -3'
miRNA:   3'- -UCGGG-CU-CGGG-CUCgGgCUCGGGCUc -5'
6360 5' -65.8 NC_001847.1 + 21635 0.67 0.396683
Target:  5'- cGGCgCGGG-CCGcGCCCGGGCgCGAc -3'
miRNA:   3'- -UCGgGCUCgGGCuCGGGCUCGgGCUc -5'
6360 5' -65.8 NC_001847.1 + 21772 0.76 0.095209
Target:  5'- cGGCgCCGGGCCCGgcgccggccgggcgcGGgucCCCGGGCCCGGGg -3'
miRNA:   3'- -UCG-GGCUCGGGC---------------UC---GGGCUCGGGCUC- -5'
6360 5' -65.8 NC_001847.1 + 21886 0.71 0.220009
Target:  5'- cGCugCCGAGgCCGAGCCCGcGacuaCCGAGa -3'
miRNA:   3'- uCG--GGCUCgGGCUCGGGCuCg---GGCUC- -5'
6360 5' -65.8 NC_001847.1 + 21925 0.82 0.033131
Target:  5'- uGGCuCCGAGCgCGAGCCgGAGUCCGAGc -3'
miRNA:   3'- -UCG-GGCUCGgGCUCGGgCUCGGGCUC- -5'
6360 5' -65.8 NC_001847.1 + 21958 0.66 0.446588
Target:  5'- cGUCCGGGCgCUGGGCCgCG-GCgCCGGu -3'
miRNA:   3'- uCGGGCUCG-GGCUCGG-GCuCG-GGCUc -5'
6360 5' -65.8 NC_001847.1 + 22395 0.72 0.191208
Target:  5'- cGCCCGGGCCgCGGcgagcgugcucGUCCGcgggggcggGGCCCGAGa -3'
miRNA:   3'- uCGGGCUCGG-GCU-----------CGGGC---------UCGGGCUC- -5'
6360 5' -65.8 NC_001847.1 + 23353 0.76 0.091932
Target:  5'- -cCCCGucuGCCCGccCCCGGGCCCGAGa -3'
miRNA:   3'- ucGGGCu--CGGGCucGGGCUCGGGCUC- -5'
6360 5' -65.8 NC_001847.1 + 23492 0.7 0.246766
Target:  5'- -aCCUGAGCUCGAggaagccguucGCUCGAGCUCGGGu -3'
miRNA:   3'- ucGGGCUCGGGCU-----------CGGGCUCGGGCUC- -5'
6360 5' -65.8 NC_001847.1 + 23860 0.66 0.438026
Target:  5'- cGgCCGAGCgCCGccCCCG-GCCCGGc -3'
miRNA:   3'- uCgGGCUCG-GGCucGGGCuCGGGCUc -5'
6360 5' -65.8 NC_001847.1 + 24067 0.68 0.328902
Target:  5'- cGCagCCGGGCCCaGGCCCGcGGCagCGAGa -3'
miRNA:   3'- uCG--GGCUCGGGcUCGGGC-UCGg-GCUC- -5'
6360 5' -65.8 NC_001847.1 + 25171 0.72 0.191208
Target:  5'- cGCCCGGGCgagCGAGCgCGAcacGCCCGAa -3'
miRNA:   3'- uCGGGCUCGg--GCUCGgGCU---CGGGCUc -5'
6360 5' -65.8 NC_001847.1 + 28140 0.72 0.200421
Target:  5'- gGGCCCGAGgaCUGcAGCgacgCCGGGUCCGAGg -3'
miRNA:   3'- -UCGGGCUCg-GGC-UCG----GGCUCGGGCUC- -5'
6360 5' -65.8 NC_001847.1 + 28179 0.76 0.104151
Target:  5'- gGGCCCGAGgaCUGcAGCgaugCCGGGCCCGAGg -3'
miRNA:   3'- -UCGGGCUCg-GGC-UCG----GGCUCGGGCUC- -5'
6360 5' -65.8 NC_001847.1 + 28257 0.73 0.169787
Target:  5'- gAGgCCGAGgCCGAGgCUGAGgCCGGGa -3'
miRNA:   3'- -UCgGGCUCgGGCUCgGGCUCgGGCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.