miRNA display CGI


Results 41 - 60 of 283 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6360 5' -65.8 NC_001847.1 + 64461 0.66 0.446588
Target:  5'- cAGcCCCGGGCCCGcGGUCCccuccAGCCCcAGc -3'
miRNA:   3'- -UC-GGGCUCGGGC-UCGGGc----UCGGGcUC- -5'
6360 5' -65.8 NC_001847.1 + 88174 0.66 0.438026
Target:  5'- uGCCUGcugcGCuuG-GCCCGGGCgCGGGg -3'
miRNA:   3'- uCGGGCu---CGggCuCGGGCUCGgGCUC- -5'
6360 5' -65.8 NC_001847.1 + 123509 0.66 0.438026
Target:  5'- gGGCCgGGGCCaGGGCUgccgCGGGCUCGGc -3'
miRNA:   3'- -UCGGgCUCGGgCUCGG----GCUCGGGCUc -5'
6360 5' -65.8 NC_001847.1 + 23860 0.66 0.438026
Target:  5'- cGgCCGAGCgCCGccCCCG-GCCCGGc -3'
miRNA:   3'- uCgGGCUCG-GGCucGGGCuCGGGCUc -5'
6360 5' -65.8 NC_001847.1 + 30018 0.66 0.438026
Target:  5'- cGCCCGcguGCUgGGGCCCaugccGCCCGGc -3'
miRNA:   3'- uCGGGCu--CGGgCUCGGGcu---CGGGCUc -5'
6360 5' -65.8 NC_001847.1 + 64222 0.66 0.438026
Target:  5'- uGCCCGGGCggCG-GCgCGAagcuGCCCGAGu -3'
miRNA:   3'- uCGGGCUCGg-GCuCGgGCU----CGGGCUC- -5'
6360 5' -65.8 NC_001847.1 + 85075 0.66 0.438026
Target:  5'- cGCCCGGGUCCGcGCCgCGcgcGGaCCCGcGg -3'
miRNA:   3'- uCGGGCUCGGGCuCGG-GC---UC-GGGCuC- -5'
6360 5' -65.8 NC_001847.1 + 127423 0.66 0.438026
Target:  5'- cGCCCGcGCCCuGcGCCUGAauGCCCaAGg -3'
miRNA:   3'- uCGGGCuCGGG-CuCGGGCU--CGGGcUC- -5'
6360 5' -65.8 NC_001847.1 + 17339 0.66 0.446588
Target:  5'- gGGCcacaCCGAGCCCucGGUCC-AGCCCGcAGg -3'
miRNA:   3'- -UCG----GGCUCGGGc-UCGGGcUCGGGC-UC- -5'
6360 5' -65.8 NC_001847.1 + 123563 0.66 0.42956
Target:  5'- gGGCuuGGGCCgGGGCCgccgCGAGCggggccggaCCGGGc -3'
miRNA:   3'- -UCGggCUCGGgCUCGG----GCUCG---------GGCUC- -5'
6360 5' -65.8 NC_001847.1 + 31921 0.66 0.446588
Target:  5'- cGCCCGc-CCCGGGCCCcGGUCuCGGu -3'
miRNA:   3'- uCGGGCucGGGCUCGGGcUCGG-GCUc -5'
6360 5' -65.8 NC_001847.1 + 132993 0.67 0.36547
Target:  5'- -cCCCGAGCCCuGGcGCCCGGcGCUCGc- -3'
miRNA:   3'- ucGGGCUCGGG-CU-CGGGCU-CGGGCuc -5'
6360 5' -65.8 NC_001847.1 + 29307 0.67 0.36547
Target:  5'- aGGCCgCG-GCCgcggacaagCGAGCCgCGAGCgCGAGu -3'
miRNA:   3'- -UCGG-GCuCGG---------GCUCGG-GCUCGgGCUC- -5'
6360 5' -65.8 NC_001847.1 + 42181 0.67 0.36547
Target:  5'- cGCCCGcccGCCCGAGCCgUGuGCgaucgUCGAGg -3'
miRNA:   3'- uCGGGCu--CGGGCUCGG-GCuCG-----GGCUC- -5'
6360 5' -65.8 NC_001847.1 + 12348 0.67 0.36547
Target:  5'- uGCCCGAGucagcgccccaCCgGAGCCUGcuggagcgcacGGCCCGGa -3'
miRNA:   3'- uCGGGCUC-----------GGgCUCGGGC-----------UCGGGCUc -5'
6360 5' -65.8 NC_001847.1 + 34175 0.67 0.36547
Target:  5'- cGCUCgGAGCUCG-GCgCCGAGCCCc-- -3'
miRNA:   3'- uCGGG-CUCGGGCuCG-GGCUCGGGcuc -5'
6360 5' -65.8 NC_001847.1 + 71367 0.67 0.36547
Target:  5'- aAGCCCGcGUCCGcGCggucuCCGGGCCUGGc -3'
miRNA:   3'- -UCGGGCuCGGGCuCG-----GGCUCGGGCUc -5'
6360 5' -65.8 NC_001847.1 + 83218 0.67 0.36547
Target:  5'- cGCCCcGGCCaCGAucGCCgUGAGCCCGu- -3'
miRNA:   3'- uCGGGcUCGG-GCU--CGG-GCUCGGGCuc -5'
6360 5' -65.8 NC_001847.1 + 8827 0.67 0.412919
Target:  5'- -aCCCGAGCUCGAGCgaacggcuuccUCGAGCUCa-- -3'
miRNA:   3'- ucGGGCUCGGGCUCG-----------GGCUCGGGcuc -5'
6360 5' -65.8 NC_001847.1 + 66676 0.67 0.412919
Target:  5'- cGCCCGcgcggcggGGCCCcGGCCgCGGGCgCGGa -3'
miRNA:   3'- uCGGGC--------UCGGGcUCGG-GCUCGgGCUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.