miRNA display CGI


Results 41 - 60 of 283 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6360 5' -65.8 NC_001847.1 + 131070 0.73 0.169787
Target:  5'- gAGgCCGAGgCCGAGgCUGAGgCCGGGa -3'
miRNA:   3'- -UCgGGCUCgGGCUCgGGCUCgGGCUC- -5'
6360 5' -65.8 NC_001847.1 + 130992 0.76 0.104151
Target:  5'- gGGCCCGAGgaCUGcAGCgaugCCGGGCCCGAGg -3'
miRNA:   3'- -UCGGGCUCg-GGC-UCG----GGCUCGGGCUC- -5'
6360 5' -65.8 NC_001847.1 + 103734 0.86 0.01731
Target:  5'- cGCCCGccggcgccgggaAGCCCGAGCCCGcGCCCGGGg -3'
miRNA:   3'- uCGGGC------------UCGGGCUCGGGCuCGGGCUC- -5'
6360 5' -65.8 NC_001847.1 + 77207 0.73 0.165769
Target:  5'- uGCCCgcgacgGAGCCgCGGGCcgCCGGGCCCGGa -3'
miRNA:   3'- uCGGG------CUCGG-GCUCG--GGCUCGGGCUc -5'
6360 5' -65.8 NC_001847.1 + 103067 0.89 0.0114
Target:  5'- cGCCCGGcGCCCagGGGCCCGAGCCCGGGg -3'
miRNA:   3'- uCGGGCU-CGGG--CUCGGGCUCGGGCUC- -5'
6360 5' -65.8 NC_001847.1 + 1551 0.7 0.252431
Target:  5'- aAGCCCGcccGCCCGAuagcgcGCCCGcGCCUGuGu -3'
miRNA:   3'- -UCGGGCu--CGGGCU------CGGGCuCGGGCuC- -5'
6360 5' -65.8 NC_001847.1 + 103032 0.84 0.027639
Target:  5'- cGCCCGggGGCCCGAGCCCGGGCCUc-- -3'
miRNA:   3'- uCGGGC--UCGGGCUCGGGCUCGGGcuc -5'
6360 5' -65.8 NC_001847.1 + 51559 0.7 0.243418
Target:  5'- cGCgCGuGCUCGGGCUCGcgggcgccuaccagaAGCCCGAGa -3'
miRNA:   3'- uCGgGCuCGGGCUCGGGC---------------UCGGGCUC- -5'
6360 5' -65.8 NC_001847.1 + 121741 0.71 0.230402
Target:  5'- cGCCCGucuuucuCCCGGGCCCGcggcgcGCCCGGa -3'
miRNA:   3'- uCGGGCuc-----GGGCUCGGGCu-----CGGGCUc -5'
6360 5' -65.8 NC_001847.1 + 34628 0.71 0.214964
Target:  5'- aAGUCCGGcGCCUGcGCgCCGAGgCCGAGc -3'
miRNA:   3'- -UCGGGCU-CGGGCuCG-GGCUCgGGCUC- -5'
6360 5' -65.8 NC_001847.1 + 75705 0.71 0.205171
Target:  5'- cGCUCGGGCCaCGGGCCgCGGGCCg--- -3'
miRNA:   3'- uCGGGCUCGG-GCUCGG-GCUCGGgcuc -5'
6360 5' -65.8 NC_001847.1 + 127984 0.72 0.191208
Target:  5'- cGCCCGGGCgagCGAGCgCGAcacGCCCGAa -3'
miRNA:   3'- uCGGGCUCGg--GCUCGgGCU---CGGGCUc -5'
6360 5' -65.8 NC_001847.1 + 102892 0.72 0.182368
Target:  5'- gGGCCCGGGCCCGcucugggcuccGCCCcuGGGUCCGGc -3'
miRNA:   3'- -UCGGGCUCGGGCu----------CGGG--CUCGGGCUc -5'
6360 5' -65.8 NC_001847.1 + 18720 0.73 0.154222
Target:  5'- cGCCCucGAGCCCaAGCgCGcGGCCCGGGg -3'
miRNA:   3'- uCGGG--CUCGGGcUCGgGC-UCGGGCUC- -5'
6360 5' -65.8 NC_001847.1 + 53035 0.74 0.133294
Target:  5'- cGCUCGGGCCUcGGCuCCGAGCCUGGc -3'
miRNA:   3'- uCGGGCUCGGGcUCG-GGCUCGGGCUc -5'
6360 5' -65.8 NC_001847.1 + 134884 0.75 0.11501
Target:  5'- -cCCCGGGCUCGGGCCCcuGGGCgCCGGGc -3'
miRNA:   3'- ucGGGCUCGGGCUCGGG--CUCG-GGCUC- -5'
6360 5' -65.8 NC_001847.1 + 102948 0.75 0.11501
Target:  5'- cGCCCGcgGGCCuCGGGCCCcGGCCgGGGg -3'
miRNA:   3'- uCGGGC--UCGG-GCUCGGGcUCGGgCUC- -5'
6360 5' -65.8 NC_001847.1 + 124585 0.76 0.095209
Target:  5'- cGGCgCCGGGCCCGgcgccggccgggcgcGGgucCCCGGGCCCGGGg -3'
miRNA:   3'- -UCG-GGCUCGGGC---------------UC---GGGCUCGGGCUC- -5'
6360 5' -65.8 NC_001847.1 + 98736 0.77 0.087435
Target:  5'- aAGCCgGGGCCgGGGCCgGGGCCgGGGc -3'
miRNA:   3'- -UCGGgCUCGGgCUCGGgCUCGGgCUC- -5'
6360 5' -65.8 NC_001847.1 + 77483 0.82 0.033998
Target:  5'- cGCCCG-GCCCG-GCCCGccGGCCCGAGu -3'
miRNA:   3'- uCGGGCuCGGGCuCGGGC--UCGGGCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.