Results 21 - 40 of 283 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6360 | 5' | -65.8 | NC_001847.1 | + | 134884 | 0.75 | 0.11501 |
Target: 5'- -cCCCGGGCUCGGGCCCcuGGGCgCCGGGc -3' miRNA: 3'- ucGGGCUCGGGCUCGGG--CUCG-GGCUC- -5' |
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6360 | 5' | -65.8 | NC_001847.1 | + | 102948 | 0.75 | 0.11501 |
Target: 5'- cGCCCGcgGGCCuCGGGCCCcGGCCgGGGg -3' miRNA: 3'- uCGGGC--UCGG-GCUCGGGcUCGGgCUC- -5' |
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6360 | 5' | -65.8 | NC_001847.1 | + | 111032 | 0.77 | 0.085266 |
Target: 5'- uGGCCCGAGUgCGAGCCCuGGGaCCCGc- -3' miRNA: 3'- -UCGGGCUCGgGCUCGGG-CUC-GGGCuc -5' |
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6360 | 5' | -65.8 | NC_001847.1 | + | 134924 | 0.84 | 0.024915 |
Target: 5'- aGGCCCGGGCUCGGGCCCccGGGCgCCGGGg -3' miRNA: 3'- -UCGGGCUCGGGCUCGGG--CUCG-GGCUC- -5' |
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6360 | 5' | -65.8 | NC_001847.1 | + | 52580 | 0.72 | 0.178085 |
Target: 5'- gAGCUCGAGgcggcggCCGAGgCCGAGCCCGcGGg -3' miRNA: 3'- -UCGGGCUCg------GGCUCgGGCUCGGGC-UC- -5' |
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6360 | 5' | -65.8 | NC_001847.1 | + | 95957 | 0.74 | 0.146935 |
Target: 5'- cGCCCGcuCCCaGGGCCUGAGCCuCGAc -3' miRNA: 3'- uCGGGCucGGG-CUCGGGCUCGG-GCUc -5' |
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6360 | 5' | -65.8 | NC_001847.1 | + | 130992 | 0.76 | 0.104151 |
Target: 5'- gGGCCCGAGgaCUGcAGCgaugCCGGGCCCGAGg -3' miRNA: 3'- -UCGGGCUCg-GGC-UCG----GGCUCGGGCUC- -5' |
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6360 | 5' | -65.8 | NC_001847.1 | + | 103734 | 0.86 | 0.01731 |
Target: 5'- cGCCCGccggcgccgggaAGCCCGAGCCCGcGCCCGGGg -3' miRNA: 3'- uCGGGC------------UCGGGCUCGGGCuCGGGCUC- -5' |
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6360 | 5' | -65.8 | NC_001847.1 | + | 53035 | 0.74 | 0.133294 |
Target: 5'- cGCUCGGGCCUcGGCuCCGAGCCUGGc -3' miRNA: 3'- uCGGGCUCGGGcUCG-GGCUCGGGCUc -5' |
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6360 | 5' | -65.8 | NC_001847.1 | + | 103067 | 0.89 | 0.0114 |
Target: 5'- cGCCCGGcGCCCagGGGCCCGAGCCCGGGg -3' miRNA: 3'- uCGGGCU-CGGG--CUCGGGCUCGGGCUC- -5' |
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6360 | 5' | -65.8 | NC_001847.1 | + | 134999 | 0.76 | 0.104151 |
Target: 5'- cGGCCCcccGGCCgGGGCCCGAGgCCCGcGGg -3' miRNA: 3'- -UCGGGc--UCGGgCUCGGGCUC-GGGC-UC- -5' |
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6360 | 5' | -65.8 | NC_001847.1 | + | 55577 | 0.75 | 0.117886 |
Target: 5'- aGGCCgCGAGCCCGGcGCCCcccgcGAGCCCcAGc -3' miRNA: 3'- -UCGG-GCUCGGGCU-CGGG-----CUCGGGcUC- -5' |
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6360 | 5' | -65.8 | NC_001847.1 | + | 124585 | 0.76 | 0.095209 |
Target: 5'- cGGCgCCGGGCCCGgcgccggccgggcgcGGgucCCCGGGCCCGGGg -3' miRNA: 3'- -UCG-GGCUCGGGC---------------UC---GGGCUCGGGCUC- -5' |
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6360 | 5' | -65.8 | NC_001847.1 | + | 98736 | 0.77 | 0.087435 |
Target: 5'- aAGCCgGGGCCgGGGCCgGGGCCgGGGc -3' miRNA: 3'- -UCGGgCUCGGgCUCGGgCUCGGgCUC- -5' |
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6360 | 5' | -65.8 | NC_001847.1 | + | 77483 | 0.82 | 0.033998 |
Target: 5'- cGCCCG-GCCCG-GCCCGccGGCCCGAGu -3' miRNA: 3'- uCGGGCuCGGGCuCGGGC--UCGGGCUC- -5' |
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6360 | 5' | -65.8 | NC_001847.1 | + | 103032 | 0.84 | 0.027639 |
Target: 5'- cGCCCGggGGCCCGAGCCCGGGCCUc-- -3' miRNA: 3'- uCGGGC--UCGGGCUCGGGCUCGGGcuc -5' |
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6360 | 5' | -65.8 | NC_001847.1 | + | 127984 | 0.72 | 0.191208 |
Target: 5'- cGCCCGGGCgagCGAGCgCGAcacGCCCGAa -3' miRNA: 3'- uCGGGCUCGg--GCUCGgGCU---CGGGCUc -5' |
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6360 | 5' | -65.8 | NC_001847.1 | + | 102892 | 0.72 | 0.182368 |
Target: 5'- gGGCCCGGGCCCGcucugggcuccGCCCcuGGGUCCGGc -3' miRNA: 3'- -UCGGGCUCGGGCu----------CGGG--CUCGGGCUc -5' |
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6360 | 5' | -65.8 | NC_001847.1 | + | 115203 | 0.73 | 0.165769 |
Target: 5'- aGGgCCGAGCCCucGCgCG-GCCCGAGu -3' miRNA: 3'- -UCgGGCUCGGGcuCGgGCuCGGGCUC- -5' |
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6360 | 5' | -65.8 | NC_001847.1 | + | 75121 | 0.73 | 0.150538 |
Target: 5'- uGCCCGAgaagGCCCGGGCCCc-GCCgGGGc -3' miRNA: 3'- uCGGGCU----CGGGCUCGGGcuCGGgCUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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