miRNA display CGI


Results 1 - 20 of 283 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6360 5' -65.8 NC_001847.1 + 19608 0.89 0.011106
Target:  5'- -aUCCGGGCCCGAGCUCGGGCCCGGGg -3'
miRNA:   3'- ucGGGCUCGGGCUCGGGCUCGGGCUC- -5'
6360 5' -65.8 NC_001847.1 + 130992 0.76 0.104151
Target:  5'- gGGCCCGAGgaCUGcAGCgaugCCGGGCCCGAGg -3'
miRNA:   3'- -UCGGGCUCg-GGC-UCG----GGCUCGGGCUC- -5'
6360 5' -65.8 NC_001847.1 + 102948 0.75 0.11501
Target:  5'- cGCCCGcgGGCCuCGGGCCCcGGCCgGGGg -3'
miRNA:   3'- uCGGGC--UCGG-GCUCGGGcUCGGgCUC- -5'
6360 5' -65.8 NC_001847.1 + 73712 0.66 0.463986
Target:  5'- cGCCCGgcGGCgCG-GCCgCGGGCgUCGAGg -3'
miRNA:   3'- uCGGGC--UCGgGCuCGG-GCUCG-GGCUC- -5'
6360 5' -65.8 NC_001847.1 + 103032 0.84 0.027639
Target:  5'- cGCCCGggGGCCCGAGCCCGGGCCUc-- -3'
miRNA:   3'- uCGGGC--UCGGGCUCGGGCUCGGGcuc -5'
6360 5' -65.8 NC_001847.1 + 15648 0.83 0.030657
Target:  5'- gGGCUCGGGCUCGGGCUCGGGCUCGGGc -3'
miRNA:   3'- -UCGGGCUCGGGCUCGGGCUCGGGCUC- -5'
6360 5' -65.8 NC_001847.1 + 77483 0.82 0.033998
Target:  5'- cGCCCG-GCCCG-GCCCGccGGCCCGAGu -3'
miRNA:   3'- uCGGGCuCGGGCuCGGGC--UCGGGCUC- -5'
6360 5' -65.8 NC_001847.1 + 88219 0.82 0.036736
Target:  5'- cGGCCCgGAGCCCGGGCCCGAcgcGCCCc-- -3'
miRNA:   3'- -UCGGG-CUCGGGCUCGGGCU---CGGGcuc -5'
6360 5' -65.8 NC_001847.1 + 98736 0.77 0.087435
Target:  5'- aAGCCgGGGCCgGGGCCgGGGCCgGGGc -3'
miRNA:   3'- -UCGGgCUCGGgCUCGGgCUCGGgCUC- -5'
6360 5' -65.8 NC_001847.1 + 56870 0.76 0.101591
Target:  5'- cGGCCCGGGCgCG-GCCaCGGGCCCGc- -3'
miRNA:   3'- -UCGGGCUCGgGCuCGG-GCUCGGGCuc -5'
6360 5' -65.8 NC_001847.1 + 126166 0.76 0.091932
Target:  5'- -cCCCGucuGCCCGccCCCGGGCCCGAGa -3'
miRNA:   3'- ucGGGCu--CGGGCucGGGCUCGGGCUC- -5'
6360 5' -65.8 NC_001847.1 + 111032 0.77 0.085266
Target:  5'- uGGCCCGAGUgCGAGCCCuGGGaCCCGc- -3'
miRNA:   3'- -UCGGGCUCGgGCUCGGG-CUC-GGGCuc -5'
6360 5' -65.8 NC_001847.1 + 103067 0.89 0.0114
Target:  5'- cGCCCGGcGCCCagGGGCCCGAGCCCGGGg -3'
miRNA:   3'- uCGGGCU-CGGG--CUCGGGCUCGGGCUC- -5'
6360 5' -65.8 NC_001847.1 + 124585 0.76 0.095209
Target:  5'- cGGCgCCGGGCCCGgcgccggccgggcgcGGgucCCCGGGCCCGGGg -3'
miRNA:   3'- -UCG-GGCUCGGGC---------------UC---GGGCUCGGGCUC- -5'
6360 5' -65.8 NC_001847.1 + 103734 0.86 0.01731
Target:  5'- cGCCCGccggcgccgggaAGCCCGAGCCCGcGCCCGGGg -3'
miRNA:   3'- uCGGGC------------UCGGGCUCGGGCuCGGGCUC- -5'
6360 5' -65.8 NC_001847.1 + 101718 0.81 0.046313
Target:  5'- -cUCCGAGCCCuccGAGUCCGAGUCCGAGg -3'
miRNA:   3'- ucGGGCUCGGG---CUCGGGCUCGGGCUC- -5'
6360 5' -65.8 NC_001847.1 + 135066 0.76 0.101591
Target:  5'- gAGCCCagagcGGGCCCGGGCCCGccGCgCCGAa -3'
miRNA:   3'- -UCGGG-----CUCGGGCUCGGGCu-CG-GGCUc -5'
6360 5' -65.8 NC_001847.1 + 134999 0.76 0.104151
Target:  5'- cGGCCCcccGGCCgGGGCCCGAGgCCCGcGGg -3'
miRNA:   3'- -UCGGGc--UCGGgCUCGGGCUC-GGGC-UC- -5'
6360 5' -65.8 NC_001847.1 + 134924 0.84 0.024915
Target:  5'- aGGCCCGGGCUCGGGCCCccGGGCgCCGGGg -3'
miRNA:   3'- -UCGGGCUCGGGCUCGGG--CUCG-GGCUC- -5'
6360 5' -65.8 NC_001847.1 + 21925 0.82 0.033131
Target:  5'- uGGCuCCGAGCgCGAGCCgGAGUCCGAGc -3'
miRNA:   3'- -UCG-GGCUCGgGCUCGGgCUCGGGCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.