miRNA display CGI


Results 1 - 20 of 283 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6360 5' -65.8 NC_001847.1 + 79 0.72 0.182368
Target:  5'- gGGCCCGGGCCCGcucugggcuccGCCCcuGGGUCCGGc -3'
miRNA:   3'- -UCGGGCUCGGGCu----------CGGG--CUCGGGCUc -5'
6360 5' -65.8 NC_001847.1 + 135 0.75 0.11501
Target:  5'- cGCCCGcgGGCCuCGGGCCCcGGCCgGGGg -3'
miRNA:   3'- uCGGGC--UCGG-GCUCGGGcUCGGgCUC- -5'
6360 5' -65.8 NC_001847.1 + 219 0.84 0.027639
Target:  5'- cGCCCGggGGCCCGAGCCCGGGCCUc-- -3'
miRNA:   3'- uCGGGC--UCGGGCUCGGGCUCGGGcuc -5'
6360 5' -65.8 NC_001847.1 + 254 0.89 0.0114
Target:  5'- cGCCCGGcGCCCagGGGCCCGAGCCCGGGg -3'
miRNA:   3'- uCGGGCU-CGGG--CUCGGGCUCGGGCUC- -5'
6360 5' -65.8 NC_001847.1 + 921 0.86 0.01731
Target:  5'- cGCCCGccggcgccgggaAGCCCGAGCCCGcGCCCGGGg -3'
miRNA:   3'- uCGGGC------------UCGGGCUCGGGCuCGGGCUC- -5'
6360 5' -65.8 NC_001847.1 + 1331 0.68 0.350513
Target:  5'- -cCCCGAGCCCcAGCgCCGcGCCCu-- -3'
miRNA:   3'- ucGGGCUCGGGcUCG-GGCuCGGGcuc -5'
6360 5' -65.8 NC_001847.1 + 1551 0.7 0.252431
Target:  5'- aAGCCCGcccGCCCGAuagcgcGCCCGcGCCUGuGu -3'
miRNA:   3'- -UCGGGCu--CGGGCU------CGGGCuCGGGCuC- -5'
6360 5' -65.8 NC_001847.1 + 1902 0.67 0.40475
Target:  5'- cGCCgCGAGCgCGuGCgaGAGCCCGc- -3'
miRNA:   3'- uCGG-GCUCGgGCuCGggCUCGGGCuc -5'
6360 5' -65.8 NC_001847.1 + 2132 0.68 0.357189
Target:  5'- cGCCucggggucgaaggCGAGCgCCGGGCgCCaGGGCUCGGGg -3'
miRNA:   3'- uCGG-------------GCUCG-GGCUCG-GG-CUCGGGCUC- -5'
6360 5' -65.8 NC_001847.1 + 3116 0.7 0.270067
Target:  5'- cGGCCCGccgcGGCCgaGAGCaCCggGAGCCCGGc -3'
miRNA:   3'- -UCGGGC----UCGGg-CUCG-GG--CUCGGGCUc -5'
6360 5' -65.8 NC_001847.1 + 4000 0.75 0.11501
Target:  5'- cGGCCCcgcgGGGCgCCGGGCCCGGcGCCCGc- -3'
miRNA:   3'- -UCGGG----CUCG-GGCUCGGGCU-CGGGCuc -5'
6360 5' -65.8 NC_001847.1 + 5366 0.69 0.276163
Target:  5'- cGgCCGGGCCCaGGCuCCGgcGGUCCGAGc -3'
miRNA:   3'- uCgGGCUCGGGcUCG-GGC--UCGGGCUC- -5'
6360 5' -65.8 NC_001847.1 + 5825 0.67 0.38872
Target:  5'- cGGcCCCGcGCCCGgcaGGCCCGccuugcaccaGGCCCGc- -3'
miRNA:   3'- -UC-GGGCuCGGGC---UCGGGC----------UCGGGCuc -5'
6360 5' -65.8 NC_001847.1 + 7765 0.67 0.40475
Target:  5'- aAGCCCGAcGgCCGuuggugccgaGGCUCGGGCCCc-- -3'
miRNA:   3'- -UCGGGCU-CgGGC----------UCGGGCUCGGGcuc -5'
6360 5' -65.8 NC_001847.1 + 8219 0.77 0.085266
Target:  5'- uGGCCCGAGUgCGAGCCCuGGGaCCCGc- -3'
miRNA:   3'- -UCGGGCUCGgGCUCGGG-CUC-GGGCuc -5'
6360 5' -65.8 NC_001847.1 + 8449 0.67 0.373113
Target:  5'- cGGCgCCGGGUCgGAggcgGCgCCGGGCCgGGGg -3'
miRNA:   3'- -UCG-GGCUCGGgCU----CG-GGCUCGGgCUC- -5'
6360 5' -65.8 NC_001847.1 + 8827 0.67 0.412919
Target:  5'- -aCCCGAGCUCGAGCgaacggcuuccUCGAGCUCa-- -3'
miRNA:   3'- ucGGGCUCGGGCUCG-----------GGCUCGGGcuc -5'
6360 5' -65.8 NC_001847.1 + 9301 0.69 0.301645
Target:  5'- cAGCCC-AGCCC-AGCCC-AGCCCa-- -3'
miRNA:   3'- -UCGGGcUCGGGcUCGGGcUCGGGcuc -5'
6360 5' -65.8 NC_001847.1 + 9341 0.69 0.301645
Target:  5'- cAGCCC-AGCCC-AGCCC-AGCCCa-- -3'
miRNA:   3'- -UCGGGcUCGGGcUCGGGcUCGGGcuc -5'
6360 5' -65.8 NC_001847.1 + 9401 0.69 0.301645
Target:  5'- cAGCCC-AGCCC-AGCCC-AGCCCa-- -3'
miRNA:   3'- -UCGGGcUCGGGcUCGGGcUCGGGcuc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.