miRNA display CGI


Results 1 - 20 of 283 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6360 5' -65.8 NC_001847.1 + 135066 0.76 0.101591
Target:  5'- gAGCCCagagcGGGCCCGGGCCCGccGCgCCGAa -3'
miRNA:   3'- -UCGGG-----CUCGGGCUCGGGCu-CG-GGCUc -5'
6360 5' -65.8 NC_001847.1 + 134999 0.76 0.104151
Target:  5'- cGGCCCcccGGCCgGGGCCCGAGgCCCGcGGg -3'
miRNA:   3'- -UCGGGc--UCGGgCUCGGGCUC-GGGC-UC- -5'
6360 5' -65.8 NC_001847.1 + 134924 0.84 0.024915
Target:  5'- aGGCCCGGGCUCGGGCCCccGGGCgCCGGGg -3'
miRNA:   3'- -UCGGGCUCGGGCUCGGG--CUCG-GGCUC- -5'
6360 5' -65.8 NC_001847.1 + 134884 0.75 0.11501
Target:  5'- -cCCCGGGCUCGGGCCCcuGGGCgCCGGGc -3'
miRNA:   3'- ucGGGCUCGGGCUCGGG--CUCG-GGCUC- -5'
6360 5' -65.8 NC_001847.1 + 134784 0.66 0.42119
Target:  5'- cGCggggCGGGCCCcgGGGCgCGaAGCCCGGGa -3'
miRNA:   3'- uCGg---GCUCGGG--CUCGgGC-UCGGGCUC- -5'
6360 5' -65.8 NC_001847.1 + 134727 0.68 0.350513
Target:  5'- cGCCCccGCCCGc-CCCGGGCCCu-- -3'
miRNA:   3'- uCGGGcuCGGGCucGGGCUCGGGcuc -5'
6360 5' -65.8 NC_001847.1 + 134237 0.67 0.40475
Target:  5'- aAGgCCGGGUCCGc-CUCGAGCUCGAu -3'
miRNA:   3'- -UCgGGCUCGGGCucGGGCUCGGGCUc -5'
6360 5' -65.8 NC_001847.1 + 134185 0.7 0.272493
Target:  5'- cGGCCCGGGugccggcgcagucguCcCCGGGCgCGGGCUCGGGc -3'
miRNA:   3'- -UCGGGCUC---------------G-GGCUCGgGCUCGGGCUC- -5'
6360 5' -65.8 NC_001847.1 + 133720 0.69 0.276163
Target:  5'- cGCCUGGGCCCGccaccgcgguGCCCGuGCCgccgcgCGAGu -3'
miRNA:   3'- uCGGGCUCGGGCu---------CGGGCuCGG------GCUC- -5'
6360 5' -65.8 NC_001847.1 + 133193 0.71 0.220009
Target:  5'- cGCCCG-GCgaggaCGAGCgCCGgcGGCCCGAGu -3'
miRNA:   3'- uCGGGCuCGg----GCUCG-GGC--UCGGGCUC- -5'
6360 5' -65.8 NC_001847.1 + 132993 0.67 0.36547
Target:  5'- -cCCCGAGCCCuGGcGCCCGGcGCUCGc- -3'
miRNA:   3'- ucGGGCUCGGG-CU-CGGGCU-CGGGCuc -5'
6360 5' -65.8 NC_001847.1 + 132831 0.66 0.438026
Target:  5'- cGCCCGcguGCUgGGGCCCaugccGCCCGGc -3'
miRNA:   3'- uCGGGCu--CGGgCUCGGGcu---CGGGCUc -5'
6360 5' -65.8 NC_001847.1 + 132599 0.72 0.195767
Target:  5'- cGCCCcGGCCCGgcGGCgggagcgccgCCGGGUCCGAGg -3'
miRNA:   3'- uCGGGcUCGGGC--UCG----------GGCUCGGGCUC- -5'
6360 5' -65.8 NC_001847.1 + 132251 0.66 0.466626
Target:  5'- cGUCCG-GCCCGAacggcgacgcacccgGCCCGAcgacgacGCCCGcGa -3'
miRNA:   3'- uCGGGCuCGGGCU---------------CGGGCU-------CGGGCuC- -5'
6360 5' -65.8 NC_001847.1 + 131451 0.67 0.40475
Target:  5'- gGGCCCGcGgCCGuGUUCGuGCCgGAGa -3'
miRNA:   3'- -UCGGGCuCgGGCuCGGGCuCGGgCUC- -5'
6360 5' -65.8 NC_001847.1 + 131145 0.74 0.12692
Target:  5'- gGGCCCGGcGCCCcgcgGGGCCgCGcGCCCGGGc -3'
miRNA:   3'- -UCGGGCU-CGGG----CUCGG-GCuCGGGCUC- -5'
6360 5' -65.8 NC_001847.1 + 131070 0.73 0.169787
Target:  5'- gAGgCCGAGgCCGAGgCUGAGgCCGGGa -3'
miRNA:   3'- -UCgGGCUCgGGCUCgGGCUCgGGCUC- -5'
6360 5' -65.8 NC_001847.1 + 130992 0.76 0.104151
Target:  5'- gGGCCCGAGgaCUGcAGCgaugCCGGGCCCGAGg -3'
miRNA:   3'- -UCGGGCUCg-GGC-UCG----GGCUCGGGCUC- -5'
6360 5' -65.8 NC_001847.1 + 130953 0.72 0.200421
Target:  5'- gGGCCCGAGgaCUGcAGCgacgCCGGGUCCGAGg -3'
miRNA:   3'- -UCGGGCUCg-GGC-UCG----GGCUCGGGCUC- -5'
6360 5' -65.8 NC_001847.1 + 129771 0.76 0.096647
Target:  5'- cGCUCGGaccGCCgGAGCCUGGGCCCGGc -3'
miRNA:   3'- uCGGGCU---CGGgCUCGGGCUCGGGCUc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.