miRNA display CGI


Results 21 - 40 of 283 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6360 5' -65.8 NC_001847.1 + 127984 0.72 0.191208
Target:  5'- cGCCCGGGCgagCGAGCgCGAcacGCCCGAa -3'
miRNA:   3'- uCGGGCUCGg--GCUCGgGCU---CGGGCUc -5'
6360 5' -65.8 NC_001847.1 + 127423 0.66 0.438026
Target:  5'- cGCCCGcGCCCuGcGCCUGAauGCCCaAGg -3'
miRNA:   3'- uCGGGCuCGGG-CuCGGGCU--CGGGcUC- -5'
6360 5' -65.8 NC_001847.1 + 127369 0.67 0.40475
Target:  5'- gGGCCCGAGCCUcGGCaCCaacGGCCguCGGGc -3'
miRNA:   3'- -UCGGGCUCGGGcUCG-GGc--UCGG--GCUC- -5'
6360 5' -65.8 NC_001847.1 + 126673 0.66 0.438026
Target:  5'- cGgCCGAGCgCCGccCCCG-GCCCGGc -3'
miRNA:   3'- uCgGGCUCG-GGCucGGGCuCGGGCUc -5'
6360 5' -65.8 NC_001847.1 + 126509 0.66 0.455242
Target:  5'- cGCCCGAGUCCGcAGCggCCGcuccCCCGGc -3'
miRNA:   3'- uCGGGCUCGGGC-UCG--GGCuc--GGGCUc -5'
6360 5' -65.8 NC_001847.1 + 126305 0.7 0.246766
Target:  5'- -aCCUGAGCUCGAggaagccguucGCUCGAGCUCGGGu -3'
miRNA:   3'- ucGGGCUCGGGCU-----------CGGGCUCGGGCUC- -5'
6360 5' -65.8 NC_001847.1 + 126166 0.76 0.091932
Target:  5'- -cCCCGucuGCCCGccCCCGGGCCCGAGa -3'
miRNA:   3'- ucGGGCu--CGGGCucGGGCUCGGGCUC- -5'
6360 5' -65.8 NC_001847.1 + 125208 0.72 0.191208
Target:  5'- cGCCCGGGCCgCGGcgagcgugcucGUCCGcgggggcggGGCCCGAGa -3'
miRNA:   3'- uCGGGCUCGG-GCU-----------CGGGC---------UCGGGCUC- -5'
6360 5' -65.8 NC_001847.1 + 124585 0.76 0.095209
Target:  5'- cGGCgCCGGGCCCGgcgccggccgggcgcGGgucCCCGGGCCCGGGg -3'
miRNA:   3'- -UCG-GGCUCGGGC---------------UC---GGGCUCGGGCUC- -5'
6360 5' -65.8 NC_001847.1 + 124448 0.67 0.396683
Target:  5'- cGGCgCGGG-CCGcGCCCGGGCgCGAc -3'
miRNA:   3'- -UCGgGCUCgGGCuCGGGCUCGgGCUc -5'
6360 5' -65.8 NC_001847.1 + 123873 0.7 0.258202
Target:  5'- cGGCCCuGAgGCCCuGGGgCgGGGCCCGAc -3'
miRNA:   3'- -UCGGG-CU-CGGG-CUCgGgCUCGGGCUc -5'
6360 5' -65.8 NC_001847.1 + 123563 0.66 0.42956
Target:  5'- gGGCuuGGGCCgGGGCCgccgCGAGCggggccggaCCGGGc -3'
miRNA:   3'- -UCGggCUCGGgCUCGG----GCUCG---------GGCUC- -5'
6360 5' -65.8 NC_001847.1 + 123509 0.66 0.438026
Target:  5'- gGGCCgGGGCCaGGGCUgccgCGGGCUCGGc -3'
miRNA:   3'- -UCGGgCUCGGgCUCGG----GCUCGGGCUc -5'
6360 5' -65.8 NC_001847.1 + 122837 0.67 0.38872
Target:  5'- cGCCCaccGGGCCCGcGCCCuGGCuuGuGg -3'
miRNA:   3'- uCGGG---CUCGGGCuCGGGcUCGggCuC- -5'
6360 5' -65.8 NC_001847.1 + 121903 0.67 0.378527
Target:  5'- cGCCCGcguGGCCCcgcuggccaucgcgGAGCUCGccgagcGGCCCGAc -3'
miRNA:   3'- uCGGGC---UCGGG--------------CUCGGGC------UCGGGCUc -5'
6360 5' -65.8 NC_001847.1 + 121824 0.76 0.091932
Target:  5'- cGCCCGuGCCgGAGCCCGucuGCCuCGAc -3'
miRNA:   3'- uCGGGCuCGGgCUCGGGCu--CGG-GCUc -5'
6360 5' -65.8 NC_001847.1 + 121741 0.71 0.230402
Target:  5'- cGCCCGucuuucuCCCGGGCCCGcggcgcGCCCGGa -3'
miRNA:   3'- uCGGGCuc-----GGGCUCGGGCu-----CGGGCUc -5'
6360 5' -65.8 NC_001847.1 + 121677 0.66 0.446588
Target:  5'- aAGCCCGcGaCCGAaacCCCGGGCUCGGc -3'
miRNA:   3'- -UCGGGCuCgGGCUc--GGGCUCGGGCUc -5'
6360 5' -65.8 NC_001847.1 + 119491 1.07 0.000515
Target:  5'- gAGCCCGAGCCCGAGCCCGAGCCCGAGc -3'
miRNA:   3'- -UCGGGCUCGGGCUCGGGCUCGGGCUC- -5'
6360 5' -65.8 NC_001847.1 + 118898 0.75 0.117886
Target:  5'- gGGCCgGGGCCgGGGCCgGGG-CCGAGg -3'
miRNA:   3'- -UCGGgCUCGGgCUCGGgCUCgGGCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.