miRNA display CGI


Results 21 - 40 of 283 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6360 5' -65.8 NC_001847.1 + 9573 0.67 0.38872
Target:  5'- cAGCCCGccGCCCGcGGCCgCGAucgagccgcaGCCgCGGGg -3'
miRNA:   3'- -UCGGGCu-CGGGC-UCGG-GCU----------CGG-GCUC- -5'
6360 5' -65.8 NC_001847.1 + 9628 0.69 0.308293
Target:  5'- cGCCCGccgccgcgccGGCCCGccGCUCGAGCagCCGGGc -3'
miRNA:   3'- uCGGGC----------UCGGGCu-CGGGCUCG--GGCUC- -5'
6360 5' -65.8 NC_001847.1 + 9823 0.68 0.335995
Target:  5'- cGGCCCG-GCCCGccgccGCCaUGAGCCaCGGc -3'
miRNA:   3'- -UCGGGCuCGGGCu----CGG-GCUCGG-GCUc -5'
6360 5' -65.8 NC_001847.1 + 9950 0.72 0.182368
Target:  5'- cGGCCCGGGCgccuucugccCCGAGgaCUGGGCcCCGAGg -3'
miRNA:   3'- -UCGGGCUCG----------GGCUCg-GGCUCG-GGCUC- -5'
6360 5' -65.8 NC_001847.1 + 10161 0.68 0.328902
Target:  5'- cGCCCGAGCaggCCG-GCCCGcuGCgCCGGc -3'
miRNA:   3'- uCGGGCUCG---GGCuCGGGCu-CG-GGCUc -5'
6360 5' -65.8 NC_001847.1 + 10541 0.75 0.11501
Target:  5'- gGGCCCGGggacccgcGCCCGgccGGCgCCGGGCCCGGc -3'
miRNA:   3'- -UCGGGCU--------CGGGC---UCG-GGCUCGGGCUc -5'
6360 5' -65.8 NC_001847.1 + 10699 0.68 0.335995
Target:  5'- cGCCCGGGCgCG-GCCCGcGCCgGc- -3'
miRNA:   3'- uCGGGCUCGgGCuCGGGCuCGGgCuc -5'
6360 5' -65.8 NC_001847.1 + 10896 0.71 0.220009
Target:  5'- gAGCCgGAGCUUuGGCCCGcucgcucggccGGCCCGAa -3'
miRNA:   3'- -UCGGgCUCGGGcUCGGGC-----------UCGGGCUc -5'
6360 5' -65.8 NC_001847.1 + 11268 0.66 0.42119
Target:  5'- gGGCCCc-GCCCcaGGGCCUcaGGGCCgGGGg -3'
miRNA:   3'- -UCGGGcuCGGG--CUCGGG--CUCGGgCUC- -5'
6360 5' -65.8 NC_001847.1 + 11563 0.66 0.435476
Target:  5'- aAGCCCG-GUCCGgccccgcucgcggcGGCCCcGGCCCa-- -3'
miRNA:   3'- -UCGGGCuCGGGC--------------UCGGGcUCGGGcuc -5'
6360 5' -65.8 NC_001847.1 + 11632 0.7 0.246766
Target:  5'- gAGCCCGcggcAGCCCuGGCCCcGGCCCc-- -3'
miRNA:   3'- -UCGGGC----UCGGGcUCGGGcUCGGGcuc -5'
6360 5' -65.8 NC_001847.1 + 11680 0.67 0.373113
Target:  5'- gAGCCCGcGGCggccgucgCCGGGCCa-AGCCCGGc -3'
miRNA:   3'- -UCGGGC-UCG--------GGCUCGGgcUCGGGCUc -5'
6360 5' -65.8 NC_001847.1 + 12076 0.67 0.396683
Target:  5'- aGGCCgCGGagcGCCgCGGGUCCGGcGCCCGcGg -3'
miRNA:   3'- -UCGG-GCU---CGG-GCUCGGGCU-CGGGCuC- -5'
6360 5' -65.8 NC_001847.1 + 12305 0.68 0.321229
Target:  5'- aAGCCaGGGCgCGGGCCCGGugggcgcGCCCGc- -3'
miRNA:   3'- -UCGGgCUCGgGCUCGGGCU-------CGGGCuc -5'
6360 5' -65.8 NC_001847.1 + 12348 0.67 0.36547
Target:  5'- uGCCCGAGucagcgccccaCCgGAGCCUGcuggagcgcacGGCCCGGa -3'
miRNA:   3'- uCGGGCUC-----------GGgCUCGGGC-----------UCGGGCUc -5'
6360 5' -65.8 NC_001847.1 + 15648 0.83 0.030657
Target:  5'- gGGCUCGGGCUCGGGCUCGGGCUCGGGc -3'
miRNA:   3'- -UCGGGCUCGGGCUCGGGCUCGGGCUC- -5'
6360 5' -65.8 NC_001847.1 + 16258 0.72 0.195767
Target:  5'- cGGCCCcGGcCCCGuGCaCCGAgcGCCCGGGu -3'
miRNA:   3'- -UCGGGcUC-GGGCuCG-GGCU--CGGGCUC- -5'
6360 5' -65.8 NC_001847.1 + 16457 0.66 0.42956
Target:  5'- cAGCCgGGGCUgcGGCCCG-GCCCa-- -3'
miRNA:   3'- -UCGGgCUCGGgcUCGGGCuCGGGcuc -5'
6360 5' -65.8 NC_001847.1 + 17034 0.66 0.461353
Target:  5'- gGGCCCGcuggcGGUCCGGaacaugucgcuuucGCUaaaGAGCCCGAc -3'
miRNA:   3'- -UCGGGC-----UCGGGCU--------------CGGg--CUCGGGCUc -5'
6360 5' -65.8 NC_001847.1 + 17339 0.66 0.446588
Target:  5'- gGGCcacaCCGAGCCCucGGUCC-AGCCCGcAGg -3'
miRNA:   3'- -UCG----GGCUCGGGc-UCGGGcUCGGGC-UC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.