miRNA display CGI


Results 21 - 40 of 283 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6360 5' -65.8 NC_001847.1 + 98736 0.77 0.087435
Target:  5'- aAGCCgGGGCCgGGGCCgGGGCCgGGGc -3'
miRNA:   3'- -UCGGgCUCGGgCUCGGgCUCGGgCUC- -5'
6360 5' -65.8 NC_001847.1 + 114978 0.77 0.089657
Target:  5'- cGCCCGuuGCCUGAGCgCCGAGUCCGc- -3'
miRNA:   3'- uCGGGCu-CGGGCUCG-GGCUCGGGCuc -5'
6360 5' -65.8 NC_001847.1 + 126166 0.76 0.091932
Target:  5'- -cCCCGucuGCCCGccCCCGGGCCCGAGa -3'
miRNA:   3'- ucGGGCu--CGGGCucGGGCUCGGGCUC- -5'
6360 5' -65.8 NC_001847.1 + 121824 0.76 0.091932
Target:  5'- cGCCCGuGCCgGAGCCCGucuGCCuCGAc -3'
miRNA:   3'- uCGGGCuCGGgCUCGGGCu--CGG-GCUc -5'
6360 5' -65.8 NC_001847.1 + 23353 0.76 0.091932
Target:  5'- -cCCCGucuGCCCGccCCCGGGCCCGAGa -3'
miRNA:   3'- ucGGGCu--CGGGCucGGGCUCGGGCUC- -5'
6360 5' -65.8 NC_001847.1 + 21772 0.76 0.095209
Target:  5'- cGGCgCCGGGCCCGgcgccggccgggcgcGGgucCCCGGGCCCGGGg -3'
miRNA:   3'- -UCG-GGCUCGGGC---------------UC---GGGCUCGGGCUC- -5'
6360 5' -65.8 NC_001847.1 + 124585 0.76 0.095209
Target:  5'- cGGCgCCGGGCCCGgcgccggccgggcgcGGgucCCCGGGCCCGGGg -3'
miRNA:   3'- -UCG-GGCUCGGGC---------------UC---GGGCUCGGGCUC- -5'
6360 5' -65.8 NC_001847.1 + 129771 0.76 0.096647
Target:  5'- cGCUCGGaccGCCgGAGCCUGGGCCCGGc -3'
miRNA:   3'- uCGGGCU---CGGgCUCGGGCUCGGGCUc -5'
6360 5' -65.8 NC_001847.1 + 135066 0.76 0.101591
Target:  5'- gAGCCCagagcGGGCCCGGGCCCGccGCgCCGAa -3'
miRNA:   3'- -UCGGG-----CUCGGGCUCGGGCu-CG-GGCUc -5'
6360 5' -65.8 NC_001847.1 + 56870 0.76 0.101591
Target:  5'- cGGCCCGGGCgCG-GCCaCGGGCCCGc- -3'
miRNA:   3'- -UCGGGCUCGgGCuCGG-GCUCGGGCuc -5'
6360 5' -65.8 NC_001847.1 + 32253 0.76 0.101591
Target:  5'- gAGCCCagagcGGGCCCGGGCCCGccGCgCCGAa -3'
miRNA:   3'- -UCGGG-----CUCGGGCUCGGGCu-CG-GGCUc -5'
6360 5' -65.8 NC_001847.1 + 28179 0.76 0.104151
Target:  5'- gGGCCCGAGgaCUGcAGCgaugCCGGGCCCGAGg -3'
miRNA:   3'- -UCGGGCUCg-GGC-UCG----GGCUCGGGCUC- -5'
6360 5' -65.8 NC_001847.1 + 32186 0.76 0.104151
Target:  5'- cGGCCCcccGGCCgGGGCCCGAGgCCCGcGGg -3'
miRNA:   3'- -UCGGGc--UCGGgCUCGGGCUC-GGGC-UC- -5'
6360 5' -65.8 NC_001847.1 + 134999 0.76 0.104151
Target:  5'- cGGCCCcccGGCCgGGGCCCGAGgCCCGcGGg -3'
miRNA:   3'- -UCGGGc--UCGGgCUCGGGCUC-GGGC-UC- -5'
6360 5' -65.8 NC_001847.1 + 130992 0.76 0.104151
Target:  5'- gGGCCCGAGgaCUGcAGCgaugCCGGGCCCGAGg -3'
miRNA:   3'- -UCGGGCUCg-GGC-UCG----GGCUCGGGCUC- -5'
6360 5' -65.8 NC_001847.1 + 10541 0.75 0.11501
Target:  5'- gGGCCCGGggacccgcGCCCGgccGGCgCCGGGCCCGGc -3'
miRNA:   3'- -UCGGGCU--------CGGGC---UCG-GGCUCGGGCUc -5'
6360 5' -65.8 NC_001847.1 + 4000 0.75 0.11501
Target:  5'- cGGCCCcgcgGGGCgCCGGGCCCGGcGCCCGc- -3'
miRNA:   3'- -UCGGG----CUCG-GGCUCGGGCU-CGGGCuc -5'
6360 5' -65.8 NC_001847.1 + 135 0.75 0.11501
Target:  5'- cGCCCGcgGGCCuCGGGCCCcGGCCgGGGg -3'
miRNA:   3'- uCGGGC--UCGG-GCUCGGGcUCGGgCUC- -5'
6360 5' -65.8 NC_001847.1 + 102948 0.75 0.11501
Target:  5'- cGCCCGcgGGCCuCGGGCCCcGGCCgGGGg -3'
miRNA:   3'- uCGGGC--UCGG-GCUCGGGcUCGGgCUC- -5'
6360 5' -65.8 NC_001847.1 + 32071 0.75 0.11501
Target:  5'- -cCCCGGGCUCGGGCCCcuGGGCgCCGGGc -3'
miRNA:   3'- ucGGGCUCGGGCUCGGG--CUCG-GGCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.