miRNA display CGI


Results 1 - 20 of 283 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6360 5' -65.8 NC_001847.1 + 119491 1.07 0.000515
Target:  5'- gAGCCCGAGCCCGAGCCCGAGCCCGAGc -3'
miRNA:   3'- -UCGGGCUCGGGCUCGGGCUCGGGCUC- -5'
6360 5' -65.8 NC_001847.1 + 19608 0.89 0.011106
Target:  5'- -aUCCGGGCCCGAGCUCGGGCCCGGGg -3'
miRNA:   3'- ucGGGCUCGGGCUCGGGCUCGGGCUC- -5'
6360 5' -65.8 NC_001847.1 + 254 0.89 0.0114
Target:  5'- cGCCCGGcGCCCagGGGCCCGAGCCCGGGg -3'
miRNA:   3'- uCGGGCU-CGGG--CUCGGGCUCGGGCUC- -5'
6360 5' -65.8 NC_001847.1 + 103067 0.89 0.0114
Target:  5'- cGCCCGGcGCCCagGGGCCCGAGCCCGGGg -3'
miRNA:   3'- uCGGGCU-CGGG--CUCGGGCUCGGGCUC- -5'
6360 5' -65.8 NC_001847.1 + 115533 0.88 0.01233
Target:  5'- cGcCCCGGGCCCGAGCUCGGGCCCGGa -3'
miRNA:   3'- uC-GGGCUCGGGCUCGGGCUCGGGCUc -5'
6360 5' -65.8 NC_001847.1 + 103734 0.86 0.01731
Target:  5'- cGCCCGccggcgccgggaAGCCCGAGCCCGcGCCCGGGg -3'
miRNA:   3'- uCGGGC------------UCGGGCUCGGGCuCGGGCUC- -5'
6360 5' -65.8 NC_001847.1 + 921 0.86 0.01731
Target:  5'- cGCCCGccggcgccgggaAGCCCGAGCCCGcGCCCGGGg -3'
miRNA:   3'- uCGGGC------------UCGGGCUCGGGCuCGGGCUC- -5'
6360 5' -65.8 NC_001847.1 + 32111 0.84 0.024915
Target:  5'- aGGCCCGGGCUCGGGCCCccGGGCgCCGGGg -3'
miRNA:   3'- -UCGGGCUCGGGCUCGGG--CUCG-GGCUC- -5'
6360 5' -65.8 NC_001847.1 + 134924 0.84 0.024915
Target:  5'- aGGCCCGGGCUCGGGCCCccGGGCgCCGGGg -3'
miRNA:   3'- -UCGGGCUCGGGCUCGGG--CUCG-GGCUC- -5'
6360 5' -65.8 NC_001847.1 + 219 0.84 0.027639
Target:  5'- cGCCCGggGGCCCGAGCCCGGGCCUc-- -3'
miRNA:   3'- uCGGGC--UCGGGCUCGGGCUCGGGcuc -5'
6360 5' -65.8 NC_001847.1 + 103032 0.84 0.027639
Target:  5'- cGCCCGggGGCCCGAGCCCGGGCCUc-- -3'
miRNA:   3'- uCGGGC--UCGGGCUCGGGCUCGGGcuc -5'
6360 5' -65.8 NC_001847.1 + 15648 0.83 0.030657
Target:  5'- gGGCUCGGGCUCGGGCUCGGGCUCGGGc -3'
miRNA:   3'- -UCGGGCUCGGGCUCGGGCUCGGGCUC- -5'
6360 5' -65.8 NC_001847.1 + 21925 0.82 0.033131
Target:  5'- uGGCuCCGAGCgCGAGCCgGAGUCCGAGc -3'
miRNA:   3'- -UCG-GGCUCGgGCUCGGgCUCGGGCUC- -5'
6360 5' -65.8 NC_001847.1 + 77483 0.82 0.033998
Target:  5'- cGCCCG-GCCCG-GCCCGccGGCCCGAGu -3'
miRNA:   3'- uCGGGCuCGGGCuCGGGC--UCGGGCUC- -5'
6360 5' -65.8 NC_001847.1 + 88219 0.82 0.036736
Target:  5'- cGGCCCgGAGCCCGGGCCCGAcgcGCCCc-- -3'
miRNA:   3'- -UCGGG-CUCGGGCUCGGGCU---CGGGcuc -5'
6360 5' -65.8 NC_001847.1 + 101718 0.81 0.046313
Target:  5'- -cUCCGAGCCCuccGAGUCCGAGUCCGAGg -3'
miRNA:   3'- ucGGGCUCGGG---CUCGGGCUCGGGCUC- -5'
6360 5' -65.8 NC_001847.1 + 96096 0.77 0.081081
Target:  5'- gAGCCgGAGUCgGGGCCgGAGCCgGAGu -3'
miRNA:   3'- -UCGGgCUCGGgCUCGGgCUCGGgCUC- -5'
6360 5' -65.8 NC_001847.1 + 111076 0.77 0.081081
Target:  5'- uGCCgCGGGCCUGGGCCCGGcuGCgCGAGa -3'
miRNA:   3'- uCGG-GCUCGGGCUCGGGCU--CGgGCUC- -5'
6360 5' -65.8 NC_001847.1 + 111032 0.77 0.085266
Target:  5'- uGGCCCGAGUgCGAGCCCuGGGaCCCGc- -3'
miRNA:   3'- -UCGGGCUCGgGCUCGGG-CUC-GGGCuc -5'
6360 5' -65.8 NC_001847.1 + 8219 0.77 0.085266
Target:  5'- uGGCCCGAGUgCGAGCCCuGGGaCCCGc- -3'
miRNA:   3'- -UCGGGCUCGgGCUCGGG-CUC-GGGCuc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.