miRNA display CGI


Results 1 - 20 of 283 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6360 5' -65.8 NC_001847.1 + 73712 0.66 0.463986
Target:  5'- cGCCCGgcGGCgCG-GCCgCGGGCgUCGAGg -3'
miRNA:   3'- uCGGGC--UCGgGCuCGG-GCUCG-GGCUC- -5'
6360 5' -65.8 NC_001847.1 + 76302 0.66 0.446588
Target:  5'- aGGUgCGGGCCCG-GCCCaAGUgCCGAc -3'
miRNA:   3'- -UCGgGCUCGGGCuCGGGcUCG-GGCUc -5'
6360 5' -65.8 NC_001847.1 + 64461 0.66 0.446588
Target:  5'- cAGcCCCGGGCCCGcGGUCCccuccAGCCCcAGc -3'
miRNA:   3'- -UC-GGGCUCGGGC-UCGGGc----UCGGGcUC- -5'
6360 5' -65.8 NC_001847.1 + 31921 0.66 0.446588
Target:  5'- cGCCCGc-CCCGGGCCCcGGUCuCGGu -3'
miRNA:   3'- uCGGGCucGGGCUCGGGcUCGG-GCUc -5'
6360 5' -65.8 NC_001847.1 + 17339 0.66 0.446588
Target:  5'- gGGCcacaCCGAGCCCucGGUCC-AGCCCGcAGg -3'
miRNA:   3'- -UCG----GGCUCGGGc-UCGGGcUCGGGC-UC- -5'
6360 5' -65.8 NC_001847.1 + 127423 0.66 0.438026
Target:  5'- cGCCCGcGCCCuGcGCCUGAauGCCCaAGg -3'
miRNA:   3'- uCGGGCuCGGG-CuCGGGCU--CGGGcUC- -5'
6360 5' -65.8 NC_001847.1 + 85075 0.66 0.438026
Target:  5'- cGCCCGGGUCCGcGCCgCGcgcGGaCCCGcGg -3'
miRNA:   3'- uCGGGCUCGGGCuCGG-GC---UC-GGGCuC- -5'
6360 5' -65.8 NC_001847.1 + 64222 0.66 0.438026
Target:  5'- uGCCCGGGCggCG-GCgCGAagcuGCCCGAGu -3'
miRNA:   3'- uCGGGCUCGg-GCuCGgGCU----CGGGCUC- -5'
6360 5' -65.8 NC_001847.1 + 30018 0.66 0.438026
Target:  5'- cGCCCGcguGCUgGGGCCCaugccGCCCGGc -3'
miRNA:   3'- uCGGGCu--CGGgCUCGGGcu---CGGGCUc -5'
6360 5' -65.8 NC_001847.1 + 100843 0.66 0.446588
Target:  5'- cGCCCGaAGCCuCGcugacGGCCgCGAGCgCGGc -3'
miRNA:   3'- uCGGGC-UCGG-GC-----UCGG-GCUCGgGCUc -5'
6360 5' -65.8 NC_001847.1 + 68848 0.66 0.455242
Target:  5'- gAGCUCGGGCgCGAggcggcggcguGCgCCGGGCCgaaGAGg -3'
miRNA:   3'- -UCGGGCUCGgGCU-----------CG-GGCUCGGg--CUC- -5'
6360 5' -65.8 NC_001847.1 + 70558 0.66 0.455242
Target:  5'- gGGCCaCGcGCUCaauGCCCcgcGGCCCGAGg -3'
miRNA:   3'- -UCGG-GCuCGGGcu-CGGGc--UCGGGCUC- -5'
6360 5' -65.8 NC_001847.1 + 71130 0.66 0.463986
Target:  5'- aAGCCCGucccgccGCCCGGGUa-GAGCUCGcGg -3'
miRNA:   3'- -UCGGGCu------CGGGCUCGggCUCGGGCuC- -5'
6360 5' -65.8 NC_001847.1 + 61959 0.66 0.463986
Target:  5'- uGCCCGcGCgCCGuGCCCGccGGCgCGGc -3'
miRNA:   3'- uCGGGCuCG-GGCuCGGGC--UCGgGCUc -5'
6360 5' -65.8 NC_001847.1 + 17034 0.66 0.461353
Target:  5'- gGGCCCGcuggcGGUCCGGaacaugucgcuuucGCUaaaGAGCCCGAc -3'
miRNA:   3'- -UCGGGC-----UCGGGCU--------------CGGg--CUCGGGCUc -5'
6360 5' -65.8 NC_001847.1 + 80698 0.66 0.458729
Target:  5'- gGGCUCGucCCCGccccccucgucucuGCCCGGGCCgcCGAGg -3'
miRNA:   3'- -UCGGGCucGGGCu-------------CGGGCUCGG--GCUC- -5'
6360 5' -65.8 NC_001847.1 + 126509 0.66 0.455242
Target:  5'- cGCCCGAGUCCGcAGCggCCGcuccCCCGGc -3'
miRNA:   3'- uCGGGCUCGGGC-UCG--GGCuc--GGGCUc -5'
6360 5' -65.8 NC_001847.1 + 107339 0.66 0.455242
Target:  5'- cGCCgGGGCgCGAaugGCCaGAGCCCGc- -3'
miRNA:   3'- uCGGgCUCGgGCU---CGGgCUCGGGCuc -5'
6360 5' -65.8 NC_001847.1 + 103476 0.66 0.455242
Target:  5'- cGCCCuuagcuccucgGGGCgCgCGGGCuCCGGGCCCGc- -3'
miRNA:   3'- uCGGG-----------CUCG-G-GCUCG-GGCUCGGGCuc -5'
6360 5' -65.8 NC_001847.1 + 78998 0.66 0.455242
Target:  5'- uGCCCGuGCgguaGAGCCCcgccGAGCCCa-- -3'
miRNA:   3'- uCGGGCuCGgg--CUCGGG----CUCGGGcuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.