Results 21 - 40 of 283 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6360 | 5' | -65.8 | NC_001847.1 | + | 31921 | 0.66 | 0.446588 |
Target: 5'- cGCCCGc-CCCGGGCCCcGGUCuCGGu -3' miRNA: 3'- uCGGGCucGGGCUCGGGcUCGG-GCUc -5' |
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6360 | 5' | -65.8 | NC_001847.1 | + | 100843 | 0.66 | 0.446588 |
Target: 5'- cGCCCGaAGCCuCGcugacGGCCgCGAGCgCGGc -3' miRNA: 3'- uCGGGC-UCGG-GC-----UCGG-GCUCGgGCUc -5' |
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6360 | 5' | -65.8 | NC_001847.1 | + | 76302 | 0.66 | 0.446588 |
Target: 5'- aGGUgCGGGCCCG-GCCCaAGUgCCGAc -3' miRNA: 3'- -UCGgGCUCGGGCuCGGGcUCG-GGCUc -5' |
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6360 | 5' | -65.8 | NC_001847.1 | + | 17339 | 0.66 | 0.446588 |
Target: 5'- gGGCcacaCCGAGCCCucGGUCC-AGCCCGcAGg -3' miRNA: 3'- -UCG----GGCUCGGGc-UCGGGcUCGGGC-UC- -5' |
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6360 | 5' | -65.8 | NC_001847.1 | + | 64461 | 0.66 | 0.446588 |
Target: 5'- cAGcCCCGGGCCCGcGGUCCccuccAGCCCcAGc -3' miRNA: 3'- -UC-GGGCUCGGGC-UCGGGc----UCGGGcUC- -5' |
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6360 | 5' | -65.8 | NC_001847.1 | + | 34595 | 0.66 | 0.438026 |
Target: 5'- aGGCCCGGGCgCUG-GCgCGGcggcGCgCCGAGg -3' miRNA: 3'- -UCGGGCUCG-GGCuCGgGCU----CG-GGCUC- -5' |
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6360 | 5' | -65.8 | NC_001847.1 | + | 92090 | 0.66 | 0.438026 |
Target: 5'- cGUaaGAGUCCGGGCCCaucAGCCCa-- -3' miRNA: 3'- uCGggCUCGGGCUCGGGc--UCGGGcuc -5' |
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6360 | 5' | -65.8 | NC_001847.1 | + | 126673 | 0.66 | 0.438026 |
Target: 5'- cGgCCGAGCgCCGccCCCG-GCCCGGc -3' miRNA: 3'- uCgGGCUCG-GGCucGGGCuCGGGCUc -5' |
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6360 | 5' | -65.8 | NC_001847.1 | + | 86954 | 0.66 | 0.438026 |
Target: 5'- cGCCgCGcGcCCCGAGCCCGuguucacGCCCa-- -3' miRNA: 3'- uCGG-GCuC-GGGCUCGGGCu------CGGGcuc -5' |
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6360 | 5' | -65.8 | NC_001847.1 | + | 132831 | 0.66 | 0.438026 |
Target: 5'- cGCCCGcguGCUgGGGCCCaugccGCCCGGc -3' miRNA: 3'- uCGGGCu--CGGgCUCGGGcu---CGGGCUc -5' |
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6360 | 5' | -65.8 | NC_001847.1 | + | 19005 | 0.66 | 0.438026 |
Target: 5'- cGCCuCGGGCCgCGcGCCCcagcGCCCGGc -3' miRNA: 3'- uCGG-GCUCGG-GCuCGGGcu--CGGGCUc -5' |
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6360 | 5' | -65.8 | NC_001847.1 | + | 127423 | 0.66 | 0.438026 |
Target: 5'- cGCCCGcGCCCuGcGCCUGAauGCCCaAGg -3' miRNA: 3'- uCGGGCuCGGG-CuCGGGCU--CGGGcUC- -5' |
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6360 | 5' | -65.8 | NC_001847.1 | + | 85075 | 0.66 | 0.438026 |
Target: 5'- cGCCCGGGUCCGcGCCgCGcgcGGaCCCGcGg -3' miRNA: 3'- uCGGGCUCGGGCuCGG-GC---UC-GGGCuC- -5' |
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6360 | 5' | -65.8 | NC_001847.1 | + | 64222 | 0.66 | 0.438026 |
Target: 5'- uGCCCGGGCggCG-GCgCGAagcuGCCCGAGu -3' miRNA: 3'- uCGGGCUCGg-GCuCGgGCU----CGGGCUC- -5' |
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6360 | 5' | -65.8 | NC_001847.1 | + | 30018 | 0.66 | 0.438026 |
Target: 5'- cGCCCGcguGCUgGGGCCCaugccGCCCGGc -3' miRNA: 3'- uCGGGCu--CGGgCUCGGGcu---CGGGCUc -5' |
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6360 | 5' | -65.8 | NC_001847.1 | + | 23860 | 0.66 | 0.438026 |
Target: 5'- cGgCCGAGCgCCGccCCCG-GCCCGGc -3' miRNA: 3'- uCgGGCUCG-GGCucGGGCuCGGGCUc -5' |
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6360 | 5' | -65.8 | NC_001847.1 | + | 123509 | 0.66 | 0.438026 |
Target: 5'- gGGCCgGGGCCaGGGCUgccgCGGGCUCGGc -3' miRNA: 3'- -UCGGgCUCGGgCUCGG----GCUCGGGCUc -5' |
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6360 | 5' | -65.8 | NC_001847.1 | + | 88174 | 0.66 | 0.438026 |
Target: 5'- uGCCUGcugcGCuuG-GCCCGGGCgCGGGg -3' miRNA: 3'- uCGGGCu---CGggCuCGGGCUCGgGCUC- -5' |
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6360 | 5' | -65.8 | NC_001847.1 | + | 11563 | 0.66 | 0.435476 |
Target: 5'- aAGCCCG-GUCCGgccccgcucgcggcGGCCCcGGCCCa-- -3' miRNA: 3'- -UCGGGCuCGGGC--------------UCGGGcUCGGGcuc -5' |
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6360 | 5' | -65.8 | NC_001847.1 | + | 123563 | 0.66 | 0.42956 |
Target: 5'- gGGCuuGGGCCgGGGCCgccgCGAGCggggccggaCCGGGc -3' miRNA: 3'- -UCGggCUCGGgCUCGG----GCUCG---------GGCUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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