miRNA display CGI


Results 61 - 80 of 283 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6360 5' -65.8 NC_001847.1 + 101617 0.67 0.408005
Target:  5'- cGCCCGcGCCCGGcgccuccgcggcggcGCCCGccgccGCCCGc- -3'
miRNA:   3'- uCGGGCuCGGGCU---------------CGGGCu----CGGGCuc -5'
6360 5' -65.8 NC_001847.1 + 7765 0.67 0.40475
Target:  5'- aAGCCCGAcGgCCGuuggugccgaGGCUCGGGCCCc-- -3'
miRNA:   3'- -UCGGGCU-CgGGC----------UCGGGCUCGGGcuc -5'
6360 5' -65.8 NC_001847.1 + 28638 0.67 0.40475
Target:  5'- gGGCCCGcGgCCGuGUUCGuGCCgGAGa -3'
miRNA:   3'- -UCGGGCuCgGGCuCGGGCuCGGgCUC- -5'
6360 5' -65.8 NC_001847.1 + 1902 0.67 0.40475
Target:  5'- cGCCgCGAGCgCGuGCgaGAGCCCGc- -3'
miRNA:   3'- uCGG-GCUCGgGCuCGggCUCGGGCuc -5'
6360 5' -65.8 NC_001847.1 + 134237 0.67 0.40475
Target:  5'- aAGgCCGGGUCCGc-CUCGAGCUCGAu -3'
miRNA:   3'- -UCgGGCUCGGGCucGGGCUCGGGCUc -5'
6360 5' -65.8 NC_001847.1 + 98141 0.67 0.40475
Target:  5'- cAGCUCGAGCgCGccgccgccgcucGGCgCGGGCCCGc- -3'
miRNA:   3'- -UCGGGCUCGgGC------------UCGgGCUCGGGCuc -5'
6360 5' -65.8 NC_001847.1 + 104715 0.67 0.40475
Target:  5'- cGCCgCGAGCgCGuGCgaGAGCCCGc- -3'
miRNA:   3'- uCGG-GCUCGgGCuCGggCUCGGGCuc -5'
6360 5' -65.8 NC_001847.1 + 30214 0.67 0.40475
Target:  5'- cGCgCCGaAGCCgCGcgcGCCCGGG-CCGAGg -3'
miRNA:   3'- uCG-GGC-UCGG-GCu--CGGGCUCgGGCUC- -5'
6360 5' -65.8 NC_001847.1 + 127369 0.67 0.40475
Target:  5'- gGGCCCGAGCCUcGGCaCCaacGGCCguCGGGc -3'
miRNA:   3'- -UCGGGCUCGGGcUCG-GGc--UCGG--GCUC- -5'
6360 5' -65.8 NC_001847.1 + 131451 0.67 0.40475
Target:  5'- gGGCCCGcGgCCGuGUUCGuGCCgGAGa -3'
miRNA:   3'- -UCGGGCuCgGGCuCGGGCuCGGgCUC- -5'
6360 5' -65.8 NC_001847.1 + 85033 0.67 0.396683
Target:  5'- cAGCCCcAGCCCG-GCCCccagcAGCuggCCGAGc -3'
miRNA:   3'- -UCGGGcUCGGGCuCGGGc----UCG---GGCUC- -5'
6360 5' -65.8 NC_001847.1 + 21635 0.67 0.396683
Target:  5'- cGGCgCGGG-CCGcGCCCGGGCgCGAc -3'
miRNA:   3'- -UCGgGCUCgGGCuCGGGCUCGgGCUc -5'
6360 5' -65.8 NC_001847.1 + 46897 0.67 0.396683
Target:  5'- cGCCCGGcGCCCGcGCCgCGccGGCCuCGGc -3'
miRNA:   3'- uCGGGCU-CGGGCuCGG-GC--UCGG-GCUc -5'
6360 5' -65.8 NC_001847.1 + 33526 0.67 0.396683
Target:  5'- cGCCgCGgaGGCgCCGGGCgCGGGCgCCGAa -3'
miRNA:   3'- uCGG-GC--UCG-GGCUCGgGCUCG-GGCUc -5'
6360 5' -65.8 NC_001847.1 + 124448 0.67 0.396683
Target:  5'- cGGCgCGGG-CCGcGCCCGGGCgCGAc -3'
miRNA:   3'- -UCGgGCUCgGGCuCGGGCUCGgGCUc -5'
6360 5' -65.8 NC_001847.1 + 113192 0.67 0.396683
Target:  5'- cGGCCCaGcGCCCGGacgaCCGAGCUCGGa -3'
miRNA:   3'- -UCGGG-CuCGGGCUcg--GGCUCGGGCUc -5'
6360 5' -65.8 NC_001847.1 + 12076 0.67 0.396683
Target:  5'- aGGCCgCGGagcGCCgCGGGUCCGGcGCCCGcGg -3'
miRNA:   3'- -UCGG-GCU---CGG-GCUCGGGCU-CGGGCuC- -5'
6360 5' -65.8 NC_001847.1 + 5825 0.67 0.38872
Target:  5'- cGGcCCCGcGCCCGgcaGGCCCGccuugcaccaGGCCCGc- -3'
miRNA:   3'- -UC-GGGCuCGGGC---UCGGGC----------UCGGGCuc -5'
6360 5' -65.8 NC_001847.1 + 122837 0.67 0.38872
Target:  5'- cGCCCaccGGGCCCGcGCCCuGGCuuGuGg -3'
miRNA:   3'- uCGGG---CUCGGGCuCGGGcUCGggCuC- -5'
6360 5' -65.8 NC_001847.1 + 65816 0.67 0.38872
Target:  5'- cGCCagcaGcGCCCGAgGCCCGcGCCCa-- -3'
miRNA:   3'- uCGGg---CuCGGGCU-CGGGCuCGGGcuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.