miRNA display CGI


Results 81 - 100 of 474 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6361 3' -59.9 NC_001847.1 + 128168 0.66 0.706075
Target:  5'- cUGGGCGGcccGCCgGGCGgaaGCGCCGccGCg -3'
miRNA:   3'- -ACUCGUC---UGG-CCGCagaCGCGGCu-CG- -5'
6361 3' -59.9 NC_001847.1 + 2879 0.66 0.706075
Target:  5'- cGcGCGGGCCGccGCGcCgcGCGUCGAGUa -3'
miRNA:   3'- aCuCGUCUGGC--CGCaGa-CGCGGCUCG- -5'
6361 3' -59.9 NC_001847.1 + 5223 0.66 0.706075
Target:  5'- -cGGCGG-CCGGCGgg-GCGCgCGcGGCa -3'
miRNA:   3'- acUCGUCuGGCCGCagaCGCG-GC-UCG- -5'
6361 3' -59.9 NC_001847.1 + 104433 0.66 0.706075
Target:  5'- --cGC--GCgGGCGUCcaggaGCGCCGGGCu -3'
miRNA:   3'- acuCGucUGgCCGCAGa----CGCGGCUCG- -5'
6361 3' -59.9 NC_001847.1 + 49454 0.66 0.706075
Target:  5'- cGcuCAGGUCGGCGUCUuCGCCG-GCc -3'
miRNA:   3'- aCucGUCUGGCCGCAGAcGCGGCuCG- -5'
6361 3' -59.9 NC_001847.1 + 83136 0.66 0.703122
Target:  5'- -cGGCGGccGCCgcGGCGUCgggcgcguccgcgaUGCGCCGGcGCa -3'
miRNA:   3'- acUCGUC--UGG--CCGCAG--------------ACGCGGCU-CG- -5'
6361 3' -59.9 NC_001847.1 + 5391 0.66 0.701151
Target:  5'- cGAGCGG-CCGGCGgcacaggccgcGCGCUcagugagGAGCg -3'
miRNA:   3'- aCUCGUCuGGCCGCaga--------CGCGG-------CUCG- -5'
6361 3' -59.9 NC_001847.1 + 106060 0.66 0.696212
Target:  5'- cGuGCucGCCGGCGgcagggGCGCCG-GCg -3'
miRNA:   3'- aCuCGucUGGCCGCaga---CGCGGCuCG- -5'
6361 3' -59.9 NC_001847.1 + 17947 0.66 0.696212
Target:  5'- -cGGCGGcuCCGGCGUCccacggGCGuaguagcaCCGGGCg -3'
miRNA:   3'- acUCGUCu-GGCCGCAGa-----CGC--------GGCUCG- -5'
6361 3' -59.9 NC_001847.1 + 121393 0.66 0.696212
Target:  5'- gGAGgaAGACCGGgGgcaggagCUGCGUgGAGg -3'
miRNA:   3'- aCUCg-UCUGGCCgCa------GACGCGgCUCg -5'
6361 3' -59.9 NC_001847.1 + 103373 0.66 0.696212
Target:  5'- -cGGCGGACgccagCGccGCGUCUccgGCGCCGGGUc -3'
miRNA:   3'- acUCGUCUG-----GC--CGCAGA---CGCGGCUCG- -5'
6361 3' -59.9 NC_001847.1 + 3135 0.66 0.696212
Target:  5'- cGAGCAGcCCcGCGagCaGCGUgGAGCa -3'
miRNA:   3'- aCUCGUCuGGcCGCa-GaCGCGgCUCG- -5'
6361 3' -59.9 NC_001847.1 + 77350 0.66 0.696212
Target:  5'- cUGGGCGGcgacacGCCGuGCGacgCgugGCGCCG-GCg -3'
miRNA:   3'- -ACUCGUC------UGGC-CGCa--Ga--CGCGGCuCG- -5'
6361 3' -59.9 NC_001847.1 + 14339 0.66 0.696212
Target:  5'- cGGGCAGAgaaggGGUGcCUGCuGCCGAcGCu -3'
miRNA:   3'- aCUCGUCUgg---CCGCaGACG-CGGCU-CG- -5'
6361 3' -59.9 NC_001847.1 + 3247 0.66 0.696212
Target:  5'- cGuGCucGCCGGCGgcagggGCGCCG-GCg -3'
miRNA:   3'- aCuCGucUGGCCGCaga---CGCGGCuCG- -5'
6361 3' -59.9 NC_001847.1 + 41063 0.66 0.696212
Target:  5'- cUGGGCGGGCUGGCcgcgcaaacGUaCUgGUGCCG-GCc -3'
miRNA:   3'- -ACUCGUCUGGCCG---------CA-GA-CGCGGCuCG- -5'
6361 3' -59.9 NC_001847.1 + 81168 0.66 0.696212
Target:  5'- cGGGCGGAagacgUGGUG-C-GCGUCGAGCa -3'
miRNA:   3'- aCUCGUCUg----GCCGCaGaCGCGGCUCG- -5'
6361 3' -59.9 NC_001847.1 + 560 0.66 0.696212
Target:  5'- -cGGCGGACgccagCGccGCGUCUccgGCGCCGGGUc -3'
miRNA:   3'- acUCGUCUG-----GC--CGCAGA---CGCGGCUCG- -5'
6361 3' -59.9 NC_001847.1 + 70531 0.66 0.696212
Target:  5'- cUGGGCGGcguGCUGGCG-CUG-GCCGAc- -3'
miRNA:   3'- -ACUCGUC---UGGCCGCaGACgCGGCUcg -5'
6361 3' -59.9 NC_001847.1 + 13317 0.66 0.686298
Target:  5'- cGAgGCAGACgGGC-UCcggcacggGCGgCGAGCa -3'
miRNA:   3'- aCU-CGUCUGgCCGcAGa-------CGCgGCUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.