miRNA display CGI


Results 61 - 80 of 474 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6361 3' -59.9 NC_001847.1 + 3813 0.66 0.715878
Target:  5'- cGGGCGGcGgCGGCG-C-GCuGCCGGGCc -3'
miRNA:   3'- aCUCGUC-UgGCCGCaGaCG-CGGCUCG- -5'
6361 3' -59.9 NC_001847.1 + 22384 0.66 0.715878
Target:  5'- gGGGCAGAa-GGCGcccgggCcGCGgCGAGCg -3'
miRNA:   3'- aCUCGUCUggCCGCa-----GaCGCgGCUCG- -5'
6361 3' -59.9 NC_001847.1 + 98863 0.66 0.714901
Target:  5'- -cAGCAGAUCccggaagGGCGcgUGCGCCuGGGCg -3'
miRNA:   3'- acUCGUCUGG-------CCGCagACGCGG-CUCG- -5'
6361 3' -59.9 NC_001847.1 + 131119 0.66 0.714901
Target:  5'- -aAGCGGcCCcgcgagaGGCGg--GCGCCGGGCc -3'
miRNA:   3'- acUCGUCuGG-------CCGCagaCGCGGCUCG- -5'
6361 3' -59.9 NC_001847.1 + 28306 0.66 0.714901
Target:  5'- -aAGCGGcCCcgcgagaGGCGg--GCGCCGGGCc -3'
miRNA:   3'- acUCGUCuGG-------CCGCagaCGCGGCUCG- -5'
6361 3' -59.9 NC_001847.1 + 119179 0.66 0.714901
Target:  5'- gGGGCAGGCaugggaccgucgaUGGCGagcUCgucgGCGCCGcGGCc -3'
miRNA:   3'- aCUCGUCUG-------------GCCGC---AGa---CGCGGC-UCG- -5'
6361 3' -59.9 NC_001847.1 + 119119 0.66 0.714901
Target:  5'- gGGGCAGGCauggggccgucgaUGGCGagcUCgucgGCGCCGcGGCc -3'
miRNA:   3'- aCUCGUCUG-------------GCCGC---AGa---CGCGGC-UCG- -5'
6361 3' -59.9 NC_001847.1 + 96643 0.66 0.710004
Target:  5'- cGGGUacgcgucgugcgcggGGGCCGGCGgguacGCGUCGuGCg -3'
miRNA:   3'- aCUCG---------------UCUGGCCGCaga--CGCGGCuCG- -5'
6361 3' -59.9 NC_001847.1 + 134242 0.66 0.706075
Target:  5'- cGGGCGGcgGCCGGCGgCcGCGgCG-GCc -3'
miRNA:   3'- aCUCGUC--UGGCCGCaGaCGCgGCuCG- -5'
6361 3' -59.9 NC_001847.1 + 51221 0.66 0.706075
Target:  5'- cGAGCGGGCCcugcucgcgGGCGcgccgCUGCcgGCCGAu- -3'
miRNA:   3'- aCUCGUCUGG---------CCGCa----GACG--CGGCUcg -5'
6361 3' -59.9 NC_001847.1 + 96101 0.66 0.706075
Target:  5'- gGAGUcgGGGCCGGagccggaGUCgGgGCCgGAGCc -3'
miRNA:   3'- aCUCG--UCUGGCCg------CAGaCgCGG-CUCG- -5'
6361 3' -59.9 NC_001847.1 + 97544 0.66 0.706075
Target:  5'- aGAGCgcGGGCCGGCccccgGcCGCCGcAGCc -3'
miRNA:   3'- aCUCG--UCUGGCCGcaga-C-GCGGC-UCG- -5'
6361 3' -59.9 NC_001847.1 + 31429 0.66 0.706075
Target:  5'- cGGGCGGcgGCCGGCGgCcGCGgCG-GCc -3'
miRNA:   3'- aCUCGUC--UGGCCGCaGaCGCgGCuCG- -5'
6361 3' -59.9 NC_001847.1 + 89510 0.66 0.706075
Target:  5'- -cGGCAGcgcgcGCC-GCG-CUGcCGCCGGGCg -3'
miRNA:   3'- acUCGUC-----UGGcCGCaGAC-GCGGCUCG- -5'
6361 3' -59.9 NC_001847.1 + 108036 0.66 0.706075
Target:  5'- -cGGCGG-CCGGCGgg-GCGCgCGcGGCa -3'
miRNA:   3'- acUCGUCuGGCCGCagaCGCG-GC-UCG- -5'
6361 3' -59.9 NC_001847.1 + 71188 0.66 0.706075
Target:  5'- cGcGCAGcGCCGGCGcCgGCGCCauuuuGCa -3'
miRNA:   3'- aCuCGUC-UGGCCGCaGaCGCGGcu---CG- -5'
6361 3' -59.9 NC_001847.1 + 128168 0.66 0.706075
Target:  5'- cUGGGCGGcccGCCgGGCGgaaGCGCCGccGCg -3'
miRNA:   3'- -ACUCGUC---UGG-CCGCagaCGCGGCu-CG- -5'
6361 3' -59.9 NC_001847.1 + 2879 0.66 0.706075
Target:  5'- cGcGCGGGCCGccGCGcCgcGCGUCGAGUa -3'
miRNA:   3'- aCuCGUCUGGC--CGCaGa-CGCGGCUCG- -5'
6361 3' -59.9 NC_001847.1 + 104433 0.66 0.706075
Target:  5'- --cGC--GCgGGCGUCcaggaGCGCCGGGCu -3'
miRNA:   3'- acuCGucUGgCCGCAGa----CGCGGCUCG- -5'
6361 3' -59.9 NC_001847.1 + 105692 0.66 0.706075
Target:  5'- cGcGCGGGCCGccGCGcCgcGCGUCGAGUa -3'
miRNA:   3'- aCuCGUCUGGC--CGCaGa-CGCGGCUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.