miRNA display CGI


Results 41 - 60 of 474 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6361 3' -59.9 NC_001847.1 + 44299 0.66 0.725612
Target:  5'- -cGGCGcGGCgCGGCGggcCaGCGCCaGAGCg -3'
miRNA:   3'- acUCGU-CUG-GCCGCa--GaCGCGG-CUCG- -5'
6361 3' -59.9 NC_001847.1 + 29017 0.66 0.725612
Target:  5'- -cGGCGGcAgCGGCGcCcGCGCCGcGCu -3'
miRNA:   3'- acUCGUC-UgGCCGCaGaCGCGGCuCG- -5'
6361 3' -59.9 NC_001847.1 + 134586 0.66 0.719781
Target:  5'- aGAcGCGGcGCUGGCGUCcGCcgccacguuccccgcGUCGGGCa -3'
miRNA:   3'- aCU-CGUC-UGGCCGCAGaCG---------------CGGCUCG- -5'
6361 3' -59.9 NC_001847.1 + 31773 0.66 0.719781
Target:  5'- aGAcGCGGcGCUGGCGUCcGCcgccacguuccccgcGUCGGGCa -3'
miRNA:   3'- aCU-CGUC-UGGCCGCAGaCG---------------CGGCUCG- -5'
6361 3' -59.9 NC_001847.1 + 125197 0.66 0.715878
Target:  5'- gGGGCAGAa-GGCGcccgggCcGCGgCGAGCg -3'
miRNA:   3'- aCUCGUCUggCCGCa-----GaCGCgGCUCG- -5'
6361 3' -59.9 NC_001847.1 + 130745 0.66 0.715878
Target:  5'- gGAcGCGGACa-GCGcCUGgGCCGcGGCg -3'
miRNA:   3'- aCU-CGUCUGgcCGCaGACgCGGC-UCG- -5'
6361 3' -59.9 NC_001847.1 + 22384 0.66 0.715878
Target:  5'- gGGGCAGAa-GGCGcccgggCcGCGgCGAGCg -3'
miRNA:   3'- aCUCGUCUggCCGCa-----GaCGCgGCUCG- -5'
6361 3' -59.9 NC_001847.1 + 106626 0.66 0.715878
Target:  5'- cGGGCGGcGgCGGCG-C-GCuGCCGGGCc -3'
miRNA:   3'- aCUCGUC-UgGCCGCaGaCG-CGGCUCG- -5'
6361 3' -59.9 NC_001847.1 + 3813 0.66 0.715878
Target:  5'- cGGGCGGcGgCGGCG-C-GCuGCCGGGCc -3'
miRNA:   3'- aCUCGUC-UgGCCGCaGaCG-CGGCUCG- -5'
6361 3' -59.9 NC_001847.1 + 89324 0.66 0.715878
Target:  5'- cGAGUGGcCCgGGCGgcagCUccCGCCGGGCu -3'
miRNA:   3'- aCUCGUCuGG-CCGCa---GAc-GCGGCUCG- -5'
6361 3' -59.9 NC_001847.1 + 44072 0.66 0.715878
Target:  5'- cGuGCAGcugucgugccuGCugCGGCGUCUGCGCCc-GCc -3'
miRNA:   3'- aCuCGUC-----------UG--GCCGCAGACGCGGcuCG- -5'
6361 3' -59.9 NC_001847.1 + 2984 0.66 0.715878
Target:  5'- --cGCcgGGGCCGGCG-CUGgaGCCGcGCg -3'
miRNA:   3'- acuCG--UCUGGCCGCaGACg-CGGCuCG- -5'
6361 3' -59.9 NC_001847.1 + 75484 0.66 0.715878
Target:  5'- aGAGCGcACgGGCGg--GCG-CGAGCg -3'
miRNA:   3'- aCUCGUcUGgCCGCagaCGCgGCUCG- -5'
6361 3' -59.9 NC_001847.1 + 57 0.66 0.715878
Target:  5'- gGGGCGGAaauuUCGGCG-CgGCGggcCCGGGCc -3'
miRNA:   3'- aCUCGUCU----GGCCGCaGaCGC---GGCUCG- -5'
6361 3' -59.9 NC_001847.1 + 42201 0.66 0.715878
Target:  5'- cGcAGCGGACCuccuGCGa-UGCGCCG-GCg -3'
miRNA:   3'- aC-UCGUCUGGc---CGCagACGCGGCuCG- -5'
6361 3' -59.9 NC_001847.1 + 31084 0.66 0.715878
Target:  5'- -cAGUAcGACgCGGCG-CUgGgGCCGGGCa -3'
miRNA:   3'- acUCGU-CUG-GCCGCaGA-CgCGGCUCG- -5'
6361 3' -59.9 NC_001847.1 + 59848 0.66 0.715878
Target:  5'- gGGGCAccGGCCaGGCG-CgGuCGCCGAGg -3'
miRNA:   3'- aCUCGU--CUGG-CCGCaGaC-GCGGCUCg -5'
6361 3' -59.9 NC_001847.1 + 60503 0.66 0.715878
Target:  5'- cGcGCGGGCCGGCGg--GCcuuuuuaugGCCGcGGCa -3'
miRNA:   3'- aCuCGUCUGGCCGCagaCG---------CGGC-UCG- -5'
6361 3' -59.9 NC_001847.1 + 102870 0.66 0.715878
Target:  5'- gGGGCGGAaauuUCGGCG-CgGCGggcCCGGGCc -3'
miRNA:   3'- aCUCGUCU----GGCCGCaGaCGC---GGCUCG- -5'
6361 3' -59.9 NC_001847.1 + 86639 0.66 0.715878
Target:  5'- gUGGGCGGGCC-GCGcCgccccggagcGCGCCGcGCu -3'
miRNA:   3'- -ACUCGUCUGGcCGCaGa---------CGCGGCuCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.