miRNA display CGI


Results 41 - 60 of 474 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6361 3' -59.9 NC_001847.1 + 125737 0.72 0.351749
Target:  5'- gGGGUGGGCUGGCugggCUGgGCUGGGCu -3'
miRNA:   3'- aCUCGUCUGGCCGca--GACgCGGCUCG- -5'
6361 3' -59.9 NC_001847.1 + 133565 0.72 0.351749
Target:  5'- cGAGCGGcgcGCUGGCG-C-GCGCCGuGCu -3'
miRNA:   3'- aCUCGUC---UGGCCGCaGaCGCGGCuCG- -5'
6361 3' -59.9 NC_001847.1 + 18552 0.72 0.359487
Target:  5'- --cGCAGAgCGGCagcgCUGCGCCcaGAGCg -3'
miRNA:   3'- acuCGUCUgGCCGca--GACGCGG--CUCG- -5'
6361 3' -59.9 NC_001847.1 + 79550 0.72 0.359487
Target:  5'- cGGGgGGGCUGGgGcUCgcgggggGCGCCGGGCu -3'
miRNA:   3'- aCUCgUCUGGCCgC-AGa------CGCGGCUCG- -5'
6361 3' -59.9 NC_001847.1 + 102231 0.72 0.359487
Target:  5'- cGGGCGGGaCGGCGUCcagGCGCuCGcGCg -3'
miRNA:   3'- aCUCGUCUgGCCGCAGa--CGCG-GCuCG- -5'
6361 3' -59.9 NC_001847.1 + 77924 0.72 0.359487
Target:  5'- -aAGgAGACCGGCGggcggCUGUagcaaacgccGCCGGGCg -3'
miRNA:   3'- acUCgUCUGGCCGCa----GACG----------CGGCUCG- -5'
6361 3' -59.9 NC_001847.1 + 111259 0.72 0.367343
Target:  5'- -aGGCGGcGCCGG-GUCggaggcgGCGCCGGGCc -3'
miRNA:   3'- acUCGUC-UGGCCgCAGa------CGCGGCUCG- -5'
6361 3' -59.9 NC_001847.1 + 32370 0.72 0.367343
Target:  5'- gGGGgGGcGCCGGCGUCgcggGCGUCGcGCc -3'
miRNA:   3'- aCUCgUC-UGGCCGCAGa---CGCGGCuCG- -5'
6361 3' -59.9 NC_001847.1 + 31161 0.72 0.367343
Target:  5'- --cGCGGG-CGGCGUCgacgccGCGCUGGGCg -3'
miRNA:   3'- acuCGUCUgGCCGCAGa-----CGCGGCUCG- -5'
6361 3' -59.9 NC_001847.1 + 111338 0.72 0.367343
Target:  5'- cGAGCAGuggUCGGUGgccgCcGCGCUGGGCg -3'
miRNA:   3'- aCUCGUCu--GGCCGCa---GaCGCGGCUCG- -5'
6361 3' -59.9 NC_001847.1 + 8446 0.72 0.367343
Target:  5'- -aGGCGGcGCCGG-GUCggaggcgGCGCCGGGCc -3'
miRNA:   3'- acUCGUC-UGGCCgCAGa------CGCGGCUCG- -5'
6361 3' -59.9 NC_001847.1 + 73142 0.72 0.374514
Target:  5'- --cGCGGACCuggaggaGGCGgc-GCGCCGGGCg -3'
miRNA:   3'- acuCGUCUGG-------CCGCagaCGCGGCUCG- -5'
6361 3' -59.9 NC_001847.1 + 26368 0.72 0.374514
Target:  5'- cGGGUGGGCCGcccggcaGCGUCcgGCGCCcAGCg -3'
miRNA:   3'- aCUCGUCUGGC-------CGCAGa-CGCGGcUCG- -5'
6361 3' -59.9 NC_001847.1 + 79252 0.72 0.375316
Target:  5'- cGAGCuGcuaGCCGGCGUC-GgGCCGcGCg -3'
miRNA:   3'- aCUCGuC---UGGCCGCAGaCgCGGCuCG- -5'
6361 3' -59.9 NC_001847.1 + 22952 0.72 0.375316
Target:  5'- cUGGGUGGGCUGGgGUgggCUGgGCUGGGCu -3'
miRNA:   3'- -ACUCGUCUGGCCgCA---GACgCGGCUCG- -5'
6361 3' -59.9 NC_001847.1 + 83409 0.72 0.375316
Target:  5'- aGAGCAGccgcGCCGGCauuuggUUGCGCUGcAGCa -3'
miRNA:   3'- aCUCGUC----UGGCCGca----GACGCGGC-UCG- -5'
6361 3' -59.9 NC_001847.1 + 68847 0.72 0.383406
Target:  5'- aGAGCucGGGCgcgaggCGGCGgcgUGCGCCGGGCc -3'
miRNA:   3'- aCUCG--UCUG------GCCGCag-ACGCGGCUCG- -5'
6361 3' -59.9 NC_001847.1 + 31687 0.72 0.383406
Target:  5'- aGGGCGG-CC-GUGUCUGCGCUGuacGGCg -3'
miRNA:   3'- aCUCGUCuGGcCGCAGACGCGGC---UCG- -5'
6361 3' -59.9 NC_001847.1 + 15767 0.72 0.391611
Target:  5'- cGGGCGGcccgcuuucGCCGGCGgcaaGCGCCGcGCg -3'
miRNA:   3'- aCUCGUC---------UGGCCGCaga-CGCGGCuCG- -5'
6361 3' -59.9 NC_001847.1 + 57657 0.72 0.391611
Target:  5'- cGAcuCGGGCCGGCGggCcGgGCCGGGCg -3'
miRNA:   3'- aCUc-GUCUGGCCGCa-GaCgCGGCUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.