miRNA display CGI


Results 21 - 40 of 474 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6361 3' -59.9 NC_001847.1 + 69305 0.74 0.274532
Target:  5'- cGGGCGGACCGGCugccuUUUGgGCgCGGGCc -3'
miRNA:   3'- aCUCGUCUGGCCGc----AGACgCG-GCUCG- -5'
6361 3' -59.9 NC_001847.1 + 53709 0.74 0.274532
Target:  5'- cGAGUcuguGGGCCGGCGgCUgGCGCUGuGCg -3'
miRNA:   3'- aCUCG----UCUGGCCGCaGA-CGCGGCuCG- -5'
6361 3' -59.9 NC_001847.1 + 132384 0.74 0.280954
Target:  5'- gGGGCGccggcGCCGGCGcCgccGCGCCGGGCc -3'
miRNA:   3'- aCUCGUc----UGGCCGCaGa--CGCGGCUCG- -5'
6361 3' -59.9 NC_001847.1 + 29571 0.74 0.280954
Target:  5'- gGGGCGccggcGCCGGCGcCgccGCGCCGGGCc -3'
miRNA:   3'- aCUCGUc----UGGCCGCaGa--CGCGGCUCG- -5'
6361 3' -59.9 NC_001847.1 + 25225 0.74 0.287494
Target:  5'- aGAGCAuGAUCGGCGUCgcgGgGacaaCGAGCu -3'
miRNA:   3'- aCUCGU-CUGGCCGCAGa--CgCg---GCUCG- -5'
6361 3' -59.9 NC_001847.1 + 32931 0.74 0.287494
Target:  5'- gGAGgAGGCCGGCGgcgGgGCCGGGg -3'
miRNA:   3'- aCUCgUCUGGCCGCagaCgCGGCUCg -5'
6361 3' -59.9 NC_001847.1 + 12971 0.74 0.292812
Target:  5'- aUGAGCAGGCCauGGCGcugcaguaccggcUggggguggggggcCUGUGCCGAGCa -3'
miRNA:   3'- -ACUCGUCUGG--CCGC-------------A-------------GACGCGGCUCG- -5'
6361 3' -59.9 NC_001847.1 + 105325 0.74 0.294154
Target:  5'- --uGCGGACCuGCGUCgucguggGCGCCGGGg -3'
miRNA:   3'- acuCGUCUGGcCGCAGa------CGCGGCUCg -5'
6361 3' -59.9 NC_001847.1 + 9655 0.74 0.300933
Target:  5'- cGAGCAGcCgGGCGUCcucGCGCCcgccgcGAGCu -3'
miRNA:   3'- aCUCGUCuGgCCGCAGa--CGCGG------CUCG- -5'
6361 3' -59.9 NC_001847.1 + 124564 0.73 0.307832
Target:  5'- aGAGCAG-CgCGGCGUCUGCGUacaGGucuGCg -3'
miRNA:   3'- aCUCGUCuG-GCCGCAGACGCGg--CU---CG- -5'
6361 3' -59.9 NC_001847.1 + 33509 0.73 0.307832
Target:  5'- cGGGCGGcgGCgGGCGcCgccgcggagGCGCCGGGCg -3'
miRNA:   3'- aCUCGUC--UGgCCGCaGa--------CGCGGCUCG- -5'
6361 3' -59.9 NC_001847.1 + 125463 0.73 0.314851
Target:  5'- cGGGCGGGUCGGCGgcagCUcGCGgCGGGCg -3'
miRNA:   3'- aCUCGUCUGGCCGCa---GA-CGCgGCUCG- -5'
6361 3' -59.9 NC_001847.1 + 36976 0.73 0.314851
Target:  5'- cGGGC--GCCGGCGagCgggcccGCGCCGAGCg -3'
miRNA:   3'- aCUCGucUGGCCGCa-Ga-----CGCGGCUCG- -5'
6361 3' -59.9 NC_001847.1 + 34623 0.73 0.32199
Target:  5'- cGAGgaAGuCCGGCGcCUGCgcgccgagGCCGAGCg -3'
miRNA:   3'- aCUCg-UCuGGCCGCaGACG--------CGGCUCG- -5'
6361 3' -59.9 NC_001847.1 + 51504 0.73 0.32925
Target:  5'- gGAGCAGcgccgcGCCGGUG-CgGCGCCG-GCa -3'
miRNA:   3'- aCUCGUC------UGGCCGCaGaCGCGGCuCG- -5'
6361 3' -59.9 NC_001847.1 + 15384 0.73 0.32925
Target:  5'- gGGGCGG-UCGGCGUCggggcugGgGCCGGGUu -3'
miRNA:   3'- aCUCGUCuGGCCGCAGa------CgCGGCUCG- -5'
6361 3' -59.9 NC_001847.1 + 134643 0.73 0.33663
Target:  5'- gGGGCGGGCCGGCagcagGCGCgGAGg -3'
miRNA:   3'- aCUCGUCUGGCCGcaga-CGCGgCUCg -5'
6361 3' -59.9 NC_001847.1 + 82750 0.73 0.34413
Target:  5'- gGAGCAcGGCgccguagaCGGcCGUCUGCGCC-AGCg -3'
miRNA:   3'- aCUCGU-CUG--------GCC-GCAGACGCGGcUCG- -5'
6361 3' -59.9 NC_001847.1 + 30752 0.72 0.351749
Target:  5'- cGAGCGGcgcGCUGGCG-C-GCGCCGuGCu -3'
miRNA:   3'- aCUCGUC---UGGCCGCaGaCGCGGCuCG- -5'
6361 3' -59.9 NC_001847.1 + 16592 0.72 0.351749
Target:  5'- gGGGCGGcgugggguGCCGGCGaUCaGaCGCUGAGCa -3'
miRNA:   3'- aCUCGUC--------UGGCCGC-AGaC-GCGGCUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.