miRNA display CGI


Results 21 - 40 of 474 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6361 3' -59.9 NC_001847.1 + 3416 0.68 0.596084
Target:  5'- aGAGCAGcCCGG-Gg--GCGCCaGGCg -3'
miRNA:   3'- aCUCGUCuGGCCgCagaCGCGGcUCG- -5'
6361 3' -59.9 NC_001847.1 + 3483 0.66 0.725612
Target:  5'- -uGGCGuccccGACCGGCGgcagCgGCGCCGucacGCu -3'
miRNA:   3'- acUCGU-----CUGGCCGCa---GaCGCGGCu---CG- -5'
6361 3' -59.9 NC_001847.1 + 3757 0.67 0.643274
Target:  5'- gGGGCAGucccagaggcccucGCgGGUGUCgcccGCGCCGccgaAGCg -3'
miRNA:   3'- aCUCGUC--------------UGgCCGCAGa---CGCGGC----UCG- -5'
6361 3' -59.9 NC_001847.1 + 3774 0.67 0.676339
Target:  5'- cGAGCAGcCCgGGCGggaUGUGCUGcacgacGGCg -3'
miRNA:   3'- aCUCGUCuGG-CCGCag-ACGCGGC------UCG- -5'
6361 3' -59.9 NC_001847.1 + 3813 0.66 0.715878
Target:  5'- cGGGCGGcGgCGGCG-C-GCuGCCGGGCc -3'
miRNA:   3'- aCUCGUC-UgGCCGCaGaCG-CGGCUCG- -5'
6361 3' -59.9 NC_001847.1 + 3978 0.67 0.632218
Target:  5'- aGGGCgccggGGGCCgGGCG-CgcggccccgcgggGCGCCGGGCc -3'
miRNA:   3'- aCUCG-----UCUGG-CCGCaGa------------CGCGGCUCG- -5'
6361 3' -59.9 NC_001847.1 + 4225 0.69 0.556333
Target:  5'- cUGcGCGGuGCCGGCG-C-GCGCCG-GCa -3'
miRNA:   3'- -ACuCGUC-UGGCCGCaGaCGCGGCuCG- -5'
6361 3' -59.9 NC_001847.1 + 4630 0.69 0.536737
Target:  5'- cGGGCGGcccGCCGGCGcUCgcGCGCCucAGCc -3'
miRNA:   3'- aCUCGUC---UGGCCGC-AGa-CGCGGc-UCG- -5'
6361 3' -59.9 NC_001847.1 + 4676 0.68 0.606102
Target:  5'- cGAGCAgGGCCGG-GUCUuCcuCCGAGCc -3'
miRNA:   3'- aCUCGU-CUGGCCgCAGAcGc-GGCUCG- -5'
6361 3' -59.9 NC_001847.1 + 5223 0.66 0.706075
Target:  5'- -cGGCGG-CCGGCGgg-GCGCgCGcGGCa -3'
miRNA:   3'- acUCGUCuGGCCGCagaCGCG-GC-UCG- -5'
6361 3' -59.9 NC_001847.1 + 5391 0.66 0.701151
Target:  5'- cGAGCGG-CCGGCGgcacaggccgcGCGCUcagugagGAGCg -3'
miRNA:   3'- aCUCGUCuGGCCGCaga--------CGCGG-------CUCG- -5'
6361 3' -59.9 NC_001847.1 + 5611 0.7 0.470327
Target:  5'- -cGGUAGACgGGCGUggGCGCCGcGGUc -3'
miRNA:   3'- acUCGUCUGgCCGCAgaCGCGGC-UCG- -5'
6361 3' -59.9 NC_001847.1 + 5870 0.68 0.616138
Target:  5'- cGAGguGGuCCaGCG-CUGCGCgcaGGGCg -3'
miRNA:   3'- aCUCguCU-GGcCGCaGACGCGg--CUCG- -5'
6361 3' -59.9 NC_001847.1 + 7209 0.69 0.546507
Target:  5'- cGAGCGcGGCUGGgcCGUCcaugGCGCUGcAGCg -3'
miRNA:   3'- aCUCGU-CUGGCC--GCAGa---CGCGGC-UCG- -5'
6361 3' -59.9 NC_001847.1 + 7297 0.71 0.434302
Target:  5'- cGAGCc-GCUGGCG-CgGCGCCuGAGCg -3'
miRNA:   3'- aCUCGucUGGCCGCaGaCGCGG-CUCG- -5'
6361 3' -59.9 NC_001847.1 + 8093 0.67 0.636239
Target:  5'- -cGGCgAGAUCGGCGaCgcgGCGCC-AGCg -3'
miRNA:   3'- acUCG-UCUGGCCGCaGa--CGCGGcUCG- -5'
6361 3' -59.9 NC_001847.1 + 8137 0.7 0.461175
Target:  5'- gGGGCGGG-CGGUG-CUGCGCgaGGGCu -3'
miRNA:   3'- aCUCGUCUgGCCGCaGACGCGg-CUCG- -5'
6361 3' -59.9 NC_001847.1 + 8375 0.66 0.725612
Target:  5'- aGGGCGcGGCagcgugGGCGUCUGcCGCguaggcuaCGGGCa -3'
miRNA:   3'- aCUCGU-CUGg-----CCGCAGAC-GCG--------GCUCG- -5'
6361 3' -59.9 NC_001847.1 + 8446 0.72 0.367343
Target:  5'- -aGGCGGcGCCGG-GUCggaggcgGCGCCGGGCc -3'
miRNA:   3'- acUCGUC-UGGCCgCAGa------CGCGGCUCG- -5'
6361 3' -59.9 NC_001847.1 + 8519 0.67 0.673345
Target:  5'- aGGGCAcuucGAcgcccgccucugucCCGGCGUUUGCGUCGucgucgacGGCg -3'
miRNA:   3'- aCUCGU----CU--------------GGCCGCAGACGCGGC--------UCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.