miRNA display CGI


Results 1 - 20 of 474 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6361 3' -59.9 NC_001847.1 + 57 0.66 0.715878
Target:  5'- gGGGCGGAaauuUCGGCG-CgGCGggcCCGGGCc -3'
miRNA:   3'- aCUCGUCU----GGCCGCaGaCGC---GGCUCG- -5'
6361 3' -59.9 NC_001847.1 + 74 0.67 0.626186
Target:  5'- gGGGCGGGgUGGgGgauggGCGCgGAGCg -3'
miRNA:   3'- aCUCGUCUgGCCgCaga--CGCGgCUCG- -5'
6361 3' -59.9 NC_001847.1 + 425 0.69 0.527027
Target:  5'- gGGGCGGGCgGGCGgcgGCGgCG-GCg -3'
miRNA:   3'- aCUCGUCUGgCCGCagaCGCgGCuCG- -5'
6361 3' -59.9 NC_001847.1 + 560 0.66 0.696212
Target:  5'- -cGGCGGACgccagCGccGCGUCUccgGCGCCGGGUc -3'
miRNA:   3'- acUCGUCUG-----GC--CGCAGA---CGCGGCUCG- -5'
6361 3' -59.9 NC_001847.1 + 759 0.67 0.656326
Target:  5'- aGGGCgAGGCCGGCccgccgccggCgGCGCCG-GCc -3'
miRNA:   3'- aCUCG-UCUGGCCGca--------GaCGCGGCuCG- -5'
6361 3' -59.9 NC_001847.1 + 1057 0.69 0.556333
Target:  5'- aGAGCA-AgCGGCG---GCGCCGGGCu -3'
miRNA:   3'- aCUCGUcUgGCCGCagaCGCGGCUCG- -5'
6361 3' -59.9 NC_001847.1 + 1602 0.7 0.461175
Target:  5'- cGGGcCAGcGCgCGGCGcaCUGCGCCGcGGCa -3'
miRNA:   3'- aCUC-GUC-UG-GCCGCa-GACGCGGC-UCG- -5'
6361 3' -59.9 NC_001847.1 + 1918 0.7 0.460265
Target:  5'- gGGGCAGguggcgaggcuuaGCCGGCGcgCgGCGCaGAGCu -3'
miRNA:   3'- aCUCGUC-------------UGGCCGCa-GaCGCGgCUCG- -5'
6361 3' -59.9 NC_001847.1 + 1946 0.71 0.44316
Target:  5'- cGGGCc-GCCGGCGcUCguccuCGCCGGGCg -3'
miRNA:   3'- aCUCGucUGGCCGC-AGac---GCGGCUCG- -5'
6361 3' -59.9 NC_001847.1 + 2109 0.67 0.640259
Target:  5'- -cGGCGGGCCGcgaucucggccaGCGcCUcggggucgaaggcgaGCGCCGGGCg -3'
miRNA:   3'- acUCGUCUGGC------------CGCaGA---------------CGCGGCUCG- -5'
6361 3' -59.9 NC_001847.1 + 2217 0.7 0.488902
Target:  5'- -cAGUAGGCCGccaGCGcCgcgGCGCUGGGCg -3'
miRNA:   3'- acUCGUCUGGC---CGCaGa--CGCGGCUCG- -5'
6361 3' -59.9 NC_001847.1 + 2331 0.69 0.536737
Target:  5'- cGGGCGGGCagCGGCGgcucccgCcGCGCCG-GCc -3'
miRNA:   3'- aCUCGUCUG--GCCGCa------GaCGCGGCuCG- -5'
6361 3' -59.9 NC_001847.1 + 2761 0.67 0.676339
Target:  5'- -cGGCGGcGCCGGCGcCgGCGCCcccgccGGCg -3'
miRNA:   3'- acUCGUC-UGGCCGCaGaCGCGGc-----UCG- -5'
6361 3' -59.9 NC_001847.1 + 2879 0.66 0.706075
Target:  5'- cGcGCGGGCCGccGCGcCgcGCGUCGAGUa -3'
miRNA:   3'- aCuCGUCUGGC--CGCaGa-CGCGGCUCG- -5'
6361 3' -59.9 NC_001847.1 + 2984 0.66 0.715878
Target:  5'- --cGCcgGGGCCGGCG-CUGgaGCCGcGCg -3'
miRNA:   3'- acuCG--UCUGGCCGCaGACg-CGGCuCG- -5'
6361 3' -59.9 NC_001847.1 + 3036 0.68 0.610114
Target:  5'- cGAGCAGcUCGGCGgcccggagcacgcgcUCcgggUGCGCCGccAGCg -3'
miRNA:   3'- aCUCGUCuGGCCGC---------------AG----ACGCGGC--UCG- -5'
6361 3' -59.9 NC_001847.1 + 3135 0.66 0.696212
Target:  5'- cGAGCAGcCCcGCGagCaGCGUgGAGCa -3'
miRNA:   3'- aCUCGUCuGGcCGCa-GaCGCGgCUCG- -5'
6361 3' -59.9 NC_001847.1 + 3147 0.68 0.586092
Target:  5'- -cGGCGGcGCCGGCGgc-GCGgCGGGCc -3'
miRNA:   3'- acUCGUC-UGGCCGCagaCGCgGCUCG- -5'
6361 3' -59.9 NC_001847.1 + 3247 0.66 0.696212
Target:  5'- cGuGCucGCCGGCGgcagggGCGCCG-GCg -3'
miRNA:   3'- aCuCGucUGGCCGCaga---CGCGGCuCG- -5'
6361 3' -59.9 NC_001847.1 + 3349 0.7 0.461175
Target:  5'- cGGGUAGGCCaugggGGCGUacgcGCGCCGcaGGCu -3'
miRNA:   3'- aCUCGUCUGG-----CCGCAga--CGCGGC--UCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.