miRNA display CGI


Results 1 - 20 of 474 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6361 3' -59.9 NC_001847.1 + 135072 0.69 0.556333
Target:  5'- aGAGCGGGCCcgGGCccgCcGCGCCGAa- -3'
miRNA:   3'- aCUCGUCUGG--CCGca-GaCGCGGCUcg -5'
6361 3' -59.9 NC_001847.1 + 135027 0.67 0.646288
Target:  5'- cGGGCGGgGCCGGgGcgCgggGCGCCGgacccaggGGCg -3'
miRNA:   3'- aCUCGUC-UGGCCgCa-Ga--CGCGGC--------UCG- -5'
6361 3' -59.9 NC_001847.1 + 134867 0.69 0.546507
Target:  5'- cGcGCGGGCuCGGCGgcccccgggCUcgggccccuggGCGCCGGGCg -3'
miRNA:   3'- aCuCGUCUG-GCCGCa--------GA-----------CGCGGCUCG- -5'
6361 3' -59.9 NC_001847.1 + 134761 0.7 0.488902
Target:  5'- gGAGCGcGGuCCGGCGcgCggcGCGCgGGGCg -3'
miRNA:   3'- aCUCGU-CU-GGCCGCa-Ga--CGCGgCUCG- -5'
6361 3' -59.9 NC_001847.1 + 134643 0.73 0.33663
Target:  5'- gGGGCGGGCCGGCagcagGCGCgGAGg -3'
miRNA:   3'- aCUCGUCUGGCCGcaga-CGCGgCUCg -5'
6361 3' -59.9 NC_001847.1 + 134586 0.66 0.719781
Target:  5'- aGAcGCGGcGCUGGCGUCcGCcgccacguuccccgcGUCGGGCa -3'
miRNA:   3'- aCU-CGUC-UGGCCGCAGaCG---------------CGGCUCG- -5'
6361 3' -59.9 NC_001847.1 + 134529 0.66 0.735268
Target:  5'- aGGcGCGGGCCGcGCG-CcGCuGCgGAGCg -3'
miRNA:   3'- aCU-CGUCUGGC-CGCaGaCG-CGgCUCG- -5'
6361 3' -59.9 NC_001847.1 + 134369 0.68 0.606102
Target:  5'- cGAcgAGGCCGGCGcCgccgGCGgCGGGCc -3'
miRNA:   3'- aCUcgUCUGGCCGCaGa---CGCgGCUCG- -5'
6361 3' -59.9 NC_001847.1 + 134242 0.66 0.706075
Target:  5'- cGGGCGGcgGCCGGCGgCcGCGgCG-GCc -3'
miRNA:   3'- aCUCGUC--UGGCCGCaGaCGCgGCuCG- -5'
6361 3' -59.9 NC_001847.1 + 134168 0.7 0.499263
Target:  5'- cGuGCGGGCCGGCGcauagacgcccggcgCaGCGUgGAGCg -3'
miRNA:   3'- aCuCGUCUGGCCGCa--------------GaCGCGgCUCG- -5'
6361 3' -59.9 NC_001847.1 + 133565 0.72 0.351749
Target:  5'- cGAGCGGcgcGCUGGCG-C-GCGCCGuGCu -3'
miRNA:   3'- aCUCGUC---UGGCCGCaGaCGCGGCuCG- -5'
6361 3' -59.9 NC_001847.1 + 133267 0.67 0.656326
Target:  5'- cUGGGCA-ACCGGC---UGCuGCUGAGCg -3'
miRNA:   3'- -ACUCGUcUGGCCGcagACG-CGGCUCG- -5'
6361 3' -59.9 NC_001847.1 + 133206 0.67 0.672346
Target:  5'- cGAGC--GCCGGCGgcccgaguggccgCcGCGCCGcGGCg -3'
miRNA:   3'- aCUCGucUGGCCGCa------------GaCGCGGC-UCG- -5'
6361 3' -59.9 NC_001847.1 + 132384 0.74 0.280954
Target:  5'- gGGGCGccggcGCCGGCGcCgccGCGCCGGGCc -3'
miRNA:   3'- aCUCGUc----UGGCCGCaGa--CGCGGCUCG- -5'
6361 3' -59.9 NC_001847.1 + 132276 0.67 0.626186
Target:  5'- -cGGCGGcCCGcGCGUCggccuggGCGCUGGcGCg -3'
miRNA:   3'- acUCGUCuGGC-CGCAGa------CGCGGCU-CG- -5'
6361 3' -59.9 NC_001847.1 + 132170 0.68 0.576132
Target:  5'- cGcGCGGccCCGGCGgcgCUgcGCGCCGAGg -3'
miRNA:   3'- aCuCGUCu-GGCCGCa--GA--CGCGGCUCg -5'
6361 3' -59.9 NC_001847.1 + 132088 0.66 0.735268
Target:  5'- cGAGCAcaACCuGCGcCUGCggcuGCUGGGCg -3'
miRNA:   3'- aCUCGUc-UGGcCGCaGACG----CGGCUCG- -5'
6361 3' -59.9 NC_001847.1 + 131935 0.74 0.274532
Target:  5'- cGAGCGGcugcgcgaGCUGGCGgaccgCUGCGCCGucGCc -3'
miRNA:   3'- aCUCGUC--------UGGCCGCa----GACGCGGCu-CG- -5'
6361 3' -59.9 NC_001847.1 + 131885 0.68 0.586092
Target:  5'- cGcGCGGcGCCGGCGcccCUGCcGCCG-GCg -3'
miRNA:   3'- aCuCGUC-UGGCCGCa--GACG-CGGCuCG- -5'
6361 3' -59.9 NC_001847.1 + 131830 0.66 0.725612
Target:  5'- -cGGCGGcAgCGGCGcCcGCGCCGcGCu -3'
miRNA:   3'- acUCGUC-UgGCCGCaGaCGCGGCuCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.