miRNA display CGI


Results 21 - 40 of 474 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6361 3' -59.9 NC_001847.1 + 131231 0.67 0.676339
Target:  5'- cGGGCGcgcaACCGGCGcCcGCGCUG-GCu -3'
miRNA:   3'- aCUCGUc---UGGCCGCaGaCGCGGCuCG- -5'
6361 3' -59.9 NC_001847.1 + 131119 0.66 0.714901
Target:  5'- -aAGCGGcCCcgcgagaGGCGg--GCGCCGGGCc -3'
miRNA:   3'- acUCGUCuGG-------CCGCagaCGCGGCUCG- -5'
6361 3' -59.9 NC_001847.1 + 130904 0.67 0.636239
Target:  5'- cUGGcGCAGcucguGCCGGCG-C-GCGCCG-GCa -3'
miRNA:   3'- -ACU-CGUC-----UGGCCGCaGaCGCGGCuCG- -5'
6361 3' -59.9 NC_001847.1 + 130745 0.66 0.715878
Target:  5'- gGAcGCGGACa-GCGcCUGgGCCGcGGCg -3'
miRNA:   3'- aCU-CGUCUGgcCGCaGACgCGGC-UCG- -5'
6361 3' -59.9 NC_001847.1 + 130685 0.69 0.517384
Target:  5'- gGGGCgccgaGGACgCGGaCGUCgcggagUGCGCCGAGg -3'
miRNA:   3'- aCUCG-----UCUG-GCC-GCAG------ACGCGGCUCg -5'
6361 3' -59.9 NC_001847.1 + 130518 0.76 0.221951
Target:  5'- cGAGC--GCCGGCGggccgCccGCGCCGAGCu -3'
miRNA:   3'- aCUCGucUGGCCGCa----Ga-CGCGGCUCG- -5'
6361 3' -59.9 NC_001847.1 + 129465 0.66 0.686298
Target:  5'- cUGGGCGGccccgGCCGGCccacCUucGCGCCuGGGCg -3'
miRNA:   3'- -ACUCGUC-----UGGCCGca--GA--CGCGG-CUCG- -5'
6361 3' -59.9 NC_001847.1 + 129301 0.7 0.47957
Target:  5'- gGGGCGGGCCuggugcaaGGCGg--GCcuGCCGGGCg -3'
miRNA:   3'- aCUCGUCUGG--------CCGCagaCG--CGGCUCG- -5'
6361 3' -59.9 NC_001847.1 + 128803 0.69 0.507813
Target:  5'- aGGGCGGGCgGGCGg--GCGCgCaGGCg -3'
miRNA:   3'- aCUCGUCUGgCCGCagaCGCG-GcUCG- -5'
6361 3' -59.9 NC_001847.1 + 128168 0.66 0.706075
Target:  5'- cUGGGCGGcccGCCgGGCGgaaGCGCCGccGCg -3'
miRNA:   3'- -ACUCGUC---UGG-CCGCagaCGCGGCu-CG- -5'
6361 3' -59.9 NC_001847.1 + 127939 0.69 0.536737
Target:  5'- aGAGCGGG-CGGCGgccgcggCUGCcuaaaGCCGaAGCg -3'
miRNA:   3'- aCUCGUCUgGCCGCa------GACG-----CGGC-UCG- -5'
6361 3' -59.9 NC_001847.1 + 127579 0.7 0.461175
Target:  5'- cGGcCAGGCaGGUGUCgcgcaUGCGCUGAGCa -3'
miRNA:   3'- aCUcGUCUGgCCGCAG-----ACGCGGCUCG- -5'
6361 3' -59.9 NC_001847.1 + 127311 0.67 0.676339
Target:  5'- gGuGCcggAGACaCGGCGaCcgGCGCCGAGg -3'
miRNA:   3'- aCuCG---UCUG-GCCGCaGa-CGCGGCUCg -5'
6361 3' -59.9 NC_001847.1 + 125974 0.7 0.47957
Target:  5'- cUGGGCuGGGCUGGgGUgggCUGgGCUGGGCu -3'
miRNA:   3'- -ACUCG-UCUGGCCgCA---GACgCGGCUCG- -5'
6361 3' -59.9 NC_001847.1 + 125934 0.7 0.470327
Target:  5'- gUGGGCuGGGCUGGgGUgggCUGgGCUGGGCu -3'
miRNA:   3'- -ACUCG-UCUGGCCgCA---GACgCGGCUCG- -5'
6361 3' -59.9 NC_001847.1 + 125854 0.7 0.47957
Target:  5'- cUGGGCuGGGCUGGgGUgggCUGgGCUGGGCu -3'
miRNA:   3'- -ACUCG-UCUGGCCgCA---GACgCGGCUCG- -5'
6361 3' -59.9 NC_001847.1 + 125826 0.71 0.416899
Target:  5'- gGGGUGGGCUGGgGUgggCUGgGCUGGGCu -3'
miRNA:   3'- aCUCGUCUGGCCgCA---GACgCGGCUCG- -5'
6361 3' -59.9 NC_001847.1 + 125804 0.69 0.546507
Target:  5'- -cGGCGGGCCGGCGggcgugcagCUcaaagcgggucGgGCCGAGUg -3'
miRNA:   3'- acUCGUCUGGCCGCa--------GA-----------CgCGGCUCG- -5'
6361 3' -59.9 NC_001847.1 + 125796 0.68 0.606102
Target:  5'- gGGGUGGGCUGG-G-CUGgGCUGGGCu -3'
miRNA:   3'- aCUCGUCUGGCCgCaGACgCGGCUCG- -5'
6361 3' -59.9 NC_001847.1 + 125766 0.71 0.416899
Target:  5'- gGGGUGGGCUGGgGUgggCUGgGCUGGGCu -3'
miRNA:   3'- aCUCGUCUGGCCgCA---GACgCGGCUCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.