miRNA display CGI


Results 21 - 40 of 474 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6361 3' -59.9 NC_001847.1 + 31161 0.72 0.367343
Target:  5'- --cGCGGG-CGGCGUCgacgccGCGCUGGGCg -3'
miRNA:   3'- acuCGUCUgGCCGCAGa-----CGCGGCUCG- -5'
6361 3' -59.9 NC_001847.1 + 125737 0.72 0.351749
Target:  5'- gGGGUGGGCUGGCugggCUGgGCUGGGCu -3'
miRNA:   3'- aCUCGUCUGGCCGca--GACgCGGCUCG- -5'
6361 3' -59.9 NC_001847.1 + 53709 0.74 0.274532
Target:  5'- cGAGUcuguGGGCCGGCGgCUgGCGCUGuGCg -3'
miRNA:   3'- aCUCG----UCUGGCCGCaGA-CGCGGCuCG- -5'
6361 3' -59.9 NC_001847.1 + 51059 0.77 0.191855
Target:  5'- cGAGCAGGCCaccgaGGCGUUcGUGCgCGGGCu -3'
miRNA:   3'- aCUCGUCUGG-----CCGCAGaCGCG-GCUCG- -5'
6361 3' -59.9 NC_001847.1 + 54590 0.71 0.434302
Target:  5'- cUGGGCGGcGCUGGCGgcgcgCgcccGCGCCGAuGCc -3'
miRNA:   3'- -ACUCGUC-UGGCCGCa----Ga---CGCGGCU-CG- -5'
6361 3' -59.9 NC_001847.1 + 15767 0.72 0.391611
Target:  5'- cGGGCGGcccgcuuucGCCGGCGgcaaGCGCCGcGCg -3'
miRNA:   3'- aCUCGUC---------UGGCCGCaga-CGCGGCuCG- -5'
6361 3' -59.9 NC_001847.1 + 36976 0.73 0.314851
Target:  5'- cGGGC--GCCGGCGagCgggcccGCGCCGAGCg -3'
miRNA:   3'- aCUCGucUGGCCGCa-Ga-----CGCGGCUCG- -5'
6361 3' -59.9 NC_001847.1 + 117578 0.77 0.187202
Target:  5'- gGGGCGcgcuGcCCGGCcaaaacGUCUGCGCCGGGCu -3'
miRNA:   3'- aCUCGU----CuGGCCG------CAGACGCGGCUCG- -5'
6361 3' -59.9 NC_001847.1 + 31687 0.72 0.383406
Target:  5'- aGGGCGG-CC-GUGUCUGCGCUGuacGGCg -3'
miRNA:   3'- aCUCGUCuGGcCGCAGACGCGGC---UCG- -5'
6361 3' -59.9 NC_001847.1 + 77451 0.77 0.173833
Target:  5'- cGAGCAG-UCGGCGggcuggggCggGCGCCGGGCg -3'
miRNA:   3'- aCUCGUCuGGCCGCa-------Ga-CGCGGCUCG- -5'
6361 3' -59.9 NC_001847.1 + 34623 0.73 0.32199
Target:  5'- cGAGgaAGuCCGGCGcCUGCgcgccgagGCCGAGCg -3'
miRNA:   3'- aCUCg-UCuGGCCGCaGACG--------CGGCUCG- -5'
6361 3' -59.9 NC_001847.1 + 111259 0.72 0.367343
Target:  5'- -aGGCGGcGCCGG-GUCggaggcgGCGCCGGGCc -3'
miRNA:   3'- acUCGUC-UGGCCgCAGa------CGCGGCUCG- -5'
6361 3' -59.9 NC_001847.1 + 12971 0.74 0.292812
Target:  5'- aUGAGCAGGCCauGGCGcugcaguaccggcUggggguggggggcCUGUGCCGAGCa -3'
miRNA:   3'- -ACUCGUCUGG--CCGC-------------A-------------GACGCGGCUCG- -5'
6361 3' -59.9 NC_001847.1 + 131935 0.74 0.274532
Target:  5'- cGAGCGGcugcgcgaGCUGGCGgaccgCUGCGCCGucGCc -3'
miRNA:   3'- aCUCGUC--------UGGCCGCa----GACGCGGCu-CG- -5'
6361 3' -59.9 NC_001847.1 + 11308 0.75 0.232843
Target:  5'- aUGGGCgcgcccgccgAGGCCGGCGggcggCUgGCGCCgGAGCg -3'
miRNA:   3'- -ACUCG----------UCUGGCCGCa----GA-CGCGG-CUCG- -5'
6361 3' -59.9 NC_001847.1 + 34319 0.77 0.191855
Target:  5'- cGGGCGcGCUuGCGUCUGCGgCGAGCg -3'
miRNA:   3'- aCUCGUcUGGcCGCAGACGCgGCUCG- -5'
6361 3' -59.9 NC_001847.1 + 96343 0.71 0.434302
Target:  5'- -cGGCGGGCUGGCGUgCgacGCGCUGccGGCa -3'
miRNA:   3'- acUCGUCUGGCCGCA-Ga--CGCGGC--UCG- -5'
6361 3' -59.9 NC_001847.1 + 83586 0.71 0.434302
Target:  5'- --cGCGGaagcGCUGGCGagCUGCGCCGAcGCc -3'
miRNA:   3'- acuCGUC----UGGCCGCa-GACGCGGCU-CG- -5'
6361 3' -59.9 NC_001847.1 + 125826 0.71 0.416899
Target:  5'- gGGGUGGGCUGGgGUgggCUGgGCUGGGCu -3'
miRNA:   3'- aCUCGUCUGGCCgCA---GACgCGGCUCG- -5'
6361 3' -59.9 NC_001847.1 + 120904 0.71 0.399929
Target:  5'- aGAGCGGGCuCGGCGUUUGCccucaccacGCCcccGGCc -3'
miRNA:   3'- aCUCGUCUG-GCCGCAGACG---------CGGc--UCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.