miRNA display CGI


Results 41 - 60 of 474 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6361 3' -59.9 NC_001847.1 + 8989 0.7 0.47957
Target:  5'- cGGGCAGACgGGgGUggGgGCUGGGUg -3'
miRNA:   3'- aCUCGUCUGgCCgCAgaCgCGGCUCG- -5'
6361 3' -59.9 NC_001847.1 + 9508 0.69 0.514505
Target:  5'- cGAGCGGACCcgagccgagcgggcGGCGcgCUaGCGuCCGuGCg -3'
miRNA:   3'- aCUCGUCUGG--------------CCGCa-GA-CGC-GGCuCG- -5'
6361 3' -59.9 NC_001847.1 + 9655 0.74 0.300933
Target:  5'- cGAGCAGcCgGGCGUCcucGCGCCcgccgcGAGCu -3'
miRNA:   3'- aCUCGUCuGgCCGCAGa--CGCGG------CUCG- -5'
6361 3' -59.9 NC_001847.1 + 10056 0.67 0.656326
Target:  5'- -cGGCcGACaCGcGCGcgCUGCGCCGcGCg -3'
miRNA:   3'- acUCGuCUG-GC-CGCa-GACGCGGCuCG- -5'
6361 3' -59.9 NC_001847.1 + 10132 0.7 0.461175
Target:  5'- cGAGCGGGcCCGGcCGUa-GCG-CGAGCg -3'
miRNA:   3'- aCUCGUCU-GGCC-GCAgaCGCgGCUCG- -5'
6361 3' -59.9 NC_001847.1 + 10165 0.87 0.03638
Target:  5'- cGAGCAGGCCGGCccgCUGCGCCG-GCu -3'
miRNA:   3'- aCUCGUCUGGCCGca-GACGCGGCuCG- -5'
6361 3' -59.9 NC_001847.1 + 10303 0.68 0.616138
Target:  5'- -cAGuCAGugCGGCGgugCUGCGgCG-GCa -3'
miRNA:   3'- acUC-GUCugGCCGCa--GACGCgGCuCG- -5'
6361 3' -59.9 NC_001847.1 + 10540 0.68 0.576132
Target:  5'- cGGGCccggGGACCcGCGcCcggccgGCGCCGGGCc -3'
miRNA:   3'- aCUCG----UCUGGcCGCaGa-----CGCGGCUCG- -5'
6361 3' -59.9 NC_001847.1 + 10598 0.69 0.546507
Target:  5'- cGcGCGGGCCGGCGcCggcccGCGCCcuGCu -3'
miRNA:   3'- aCuCGUCUGGCCGCaGa----CGCGGcuCG- -5'
6361 3' -59.9 NC_001847.1 + 10732 0.68 0.576132
Target:  5'- gGAGUAuguGGCCGGCGUacagGCGCauuuucuggcaGAGCu -3'
miRNA:   3'- aCUCGU---CUGGCCGCAga--CGCGg----------CUCG- -5'
6361 3' -59.9 NC_001847.1 + 11308 0.75 0.232843
Target:  5'- aUGGGCgcgcccgccgAGGCCGGCGggcggCUgGCGCCgGAGCg -3'
miRNA:   3'- -ACUCG----------UCUGGCCGCa----GA-CGCGG-CUCG- -5'
6361 3' -59.9 NC_001847.1 + 11896 0.69 0.507813
Target:  5'- gGuGCGG-CCGGgGUCcGCGCUGGcGCg -3'
miRNA:   3'- aCuCGUCuGGCCgCAGaCGCGGCU-CG- -5'
6361 3' -59.9 NC_001847.1 + 12971 0.74 0.292812
Target:  5'- aUGAGCAGGCCauGGCGcugcaguaccggcUggggguggggggcCUGUGCCGAGCa -3'
miRNA:   3'- -ACUCGUCUGG--CCGC-------------A-------------GACGCGGCUCG- -5'
6361 3' -59.9 NC_001847.1 + 13317 0.66 0.686298
Target:  5'- cGAgGCAGACgGGC-UCcggcacggGCGgCGAGCa -3'
miRNA:   3'- aCU-CGUCUGgCCGcAGa-------CGCgGCUCG- -5'
6361 3' -59.9 NC_001847.1 + 13428 0.68 0.596084
Target:  5'- --cGCGGAgCGGgGcCUGCGCUG-GCu -3'
miRNA:   3'- acuCGUCUgGCCgCaGACGCGGCuCG- -5'
6361 3' -59.9 NC_001847.1 + 13917 0.67 0.666346
Target:  5'- gGAGUuccgggAGGCCcgcgacGGCGUCaUGCG-CGAGCu -3'
miRNA:   3'- aCUCG------UCUGG------CCGCAG-ACGCgGCUCG- -5'
6361 3' -59.9 NC_001847.1 + 14130 0.67 0.635233
Target:  5'- cGAGCGGGcgugucuCCGGCcggCUGCGCagcGGCg -3'
miRNA:   3'- aCUCGUCU-------GGCCGca-GACGCGgc-UCG- -5'
6361 3' -59.9 NC_001847.1 + 14339 0.66 0.696212
Target:  5'- cGGGCAGAgaaggGGUGcCUGCuGCCGAcGCu -3'
miRNA:   3'- aCUCGUCUgg---CCGCaGACG-CGGCU-CG- -5'
6361 3' -59.9 NC_001847.1 + 14416 0.69 0.536737
Target:  5'- cGAGCcucuGugCGGgGcUCcgcuguuugGCGCCGAGCg -3'
miRNA:   3'- aCUCGu---CugGCCgC-AGa--------CGCGGCUCG- -5'
6361 3' -59.9 NC_001847.1 + 15196 0.66 0.733344
Target:  5'- cUGGGCAGcggacccgcaccgcGCCGGCG-CguauagacgaaguacGCGCCG-GCg -3'
miRNA:   3'- -ACUCGUC--------------UGGCCGCaGa--------------CGCGGCuCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.