miRNA display CGI


Results 41 - 60 of 474 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6361 3' -59.9 NC_001847.1 + 85028 0.66 0.735268
Target:  5'- cGAGgcCAG-CCGGCGcUCUaCGCCGcccGGCg -3'
miRNA:   3'- aCUC--GUCuGGCCGC-AGAcGCGGC---UCG- -5'
6361 3' -59.9 NC_001847.1 + 87349 0.66 0.735268
Target:  5'- gGAGCcGAUC-GCGg--GCGCCGAGg -3'
miRNA:   3'- aCUCGuCUGGcCGCagaCGCGGCUCg -5'
6361 3' -59.9 NC_001847.1 + 88551 0.66 0.735268
Target:  5'- cGAGgcCGcGCCGGCGgggCUGaCGCCcGGCg -3'
miRNA:   3'- aCUC--GUcUGGCCGCa--GAC-GCGGcUCG- -5'
6361 3' -59.9 NC_001847.1 + 106797 0.66 0.735268
Target:  5'- cGGGCGGAUgaCGGCcgcgCUGCccGCCG-GCg -3'
miRNA:   3'- aCUCGUCUG--GCCGca--GACG--CGGCuCG- -5'
6361 3' -59.9 NC_001847.1 + 108733 0.66 0.735268
Target:  5'- cUGGGCGacugcGACgcgaCGGCGUUccugccGCGCUGGGCg -3'
miRNA:   3'- -ACUCGU-----CUG----GCCGCAGa-----CGCGGCUCG- -5'
6361 3' -59.9 NC_001847.1 + 64226 0.66 0.735268
Target:  5'- cGGGCGG--CGGCGcgaagCUGC-CCGAGUg -3'
miRNA:   3'- aCUCGUCugGCCGCa----GACGcGGCUCG- -5'
6361 3' -59.9 NC_001847.1 + 58061 0.66 0.735268
Target:  5'- cGGGCcgccGAUUGGCGcgCgcgcGCGCCGcAGCg -3'
miRNA:   3'- aCUCGu---CUGGCCGCa-Ga---CGCGGC-UCG- -5'
6361 3' -59.9 NC_001847.1 + 86639 0.66 0.715878
Target:  5'- gUGGGCGGGCC-GCGcCgccccggagcGCGCCGcGCu -3'
miRNA:   3'- -ACUCGUCUGGcCGCaGa---------CGCGGCuCG- -5'
6361 3' -59.9 NC_001847.1 + 89324 0.66 0.715878
Target:  5'- cGAGUGGcCCgGGCGgcagCUccCGCCGGGCu -3'
miRNA:   3'- aCUCGUCuGG-CCGCa---GAc-GCGGCUCG- -5'
6361 3' -59.9 NC_001847.1 + 3813 0.66 0.715878
Target:  5'- cGGGCGGcGgCGGCG-C-GCuGCCGGGCc -3'
miRNA:   3'- aCUCGUC-UgGCCGCaGaCG-CGGCUCG- -5'
6361 3' -59.9 NC_001847.1 + 31773 0.66 0.719781
Target:  5'- aGAcGCGGcGCUGGCGUCcGCcgccacguuccccgcGUCGGGCa -3'
miRNA:   3'- aCU-CGUC-UGGCCGCAGaCG---------------CGGCUCG- -5'
6361 3' -59.9 NC_001847.1 + 3483 0.66 0.725612
Target:  5'- -uGGCGuccccGACCGGCGgcagCgGCGCCGucacGCu -3'
miRNA:   3'- acUCGU-----CUGGCCGCa---GaCGCGGCu---CG- -5'
6361 3' -59.9 NC_001847.1 + 32801 0.66 0.725612
Target:  5'- gGGGCGGACgGcGCGUUggaGCCGGacGCg -3'
miRNA:   3'- aCUCGUCUGgC-CGCAGacgCGGCU--CG- -5'
6361 3' -59.9 NC_001847.1 + 118782 0.66 0.725612
Target:  5'- gUGAGCGGcACCGGCaGcCgccaGCGCCuccaGGCc -3'
miRNA:   3'- -ACUCGUC-UGGCCG-CaGa---CGCGGc---UCG- -5'
6361 3' -59.9 NC_001847.1 + 22090 0.66 0.725612
Target:  5'- -aAGCGGGCcCGGCaggcGCGCCGGGg -3'
miRNA:   3'- acUCGUCUG-GCCGcagaCGCGGCUCg -5'
6361 3' -59.9 NC_001847.1 + 37022 0.66 0.725612
Target:  5'- cGuGCGGAgCGGg----GCGCCGGGCu -3'
miRNA:   3'- aCuCGUCUgGCCgcagaCGCGGCUCG- -5'
6361 3' -59.9 NC_001847.1 + 44299 0.66 0.725612
Target:  5'- -cGGCGcGGCgCGGCGggcCaGCGCCaGAGCg -3'
miRNA:   3'- acUCGU-CUG-GCCGCa--GaCGCGG-CUCG- -5'
6361 3' -59.9 NC_001847.1 + 29017 0.66 0.725612
Target:  5'- -cGGCGGcAgCGGCGcCcGCGCCGcGCu -3'
miRNA:   3'- acUCGUC-UgGCCGCaGaCGCGGCuCG- -5'
6361 3' -59.9 NC_001847.1 + 15196 0.66 0.733344
Target:  5'- cUGGGCAGcggacccgcaccgcGCCGGCG-CguauagacgaaguacGCGCCG-GCg -3'
miRNA:   3'- -ACUCGUC--------------UGGCCGCaGa--------------CGCGGCuCG- -5'
6361 3' -59.9 NC_001847.1 + 78229 0.66 0.734306
Target:  5'- cGAGCucacGGuagucacccgcccGCCGGCGUCgccGuCGCCG-GCg -3'
miRNA:   3'- aCUCG----UC-------------UGGCCGCAGa--C-GCGGCuCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.