miRNA display CGI


Results 21 - 40 of 474 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6361 3' -59.9 NC_001847.1 + 75819 0.66 0.735268
Target:  5'- cGGGCuGguacggcgccGCCGGCG-CcGCGCCuGGCa -3'
miRNA:   3'- aCUCGuC----------UGGCCGCaGaCGCGGcUCG- -5'
6361 3' -59.9 NC_001847.1 + 31716 0.66 0.735268
Target:  5'- aGGcGCGGGCCGcGCG-CcGCuGCgGAGCg -3'
miRNA:   3'- aCU-CGUCUGGC-CGCaGaCG-CGgCUCG- -5'
6361 3' -59.9 NC_001847.1 + 39392 0.66 0.735268
Target:  5'- cGGGgAG-CCGGCGcCg--GCCGGGCu -3'
miRNA:   3'- aCUCgUCuGGCCGCaGacgCGGCUCG- -5'
6361 3' -59.9 NC_001847.1 + 59749 0.66 0.735268
Target:  5'- cGAGCucgacucgcuGGCC-GCGUCcgGUGCCGuGCc -3'
miRNA:   3'- aCUCGu---------CUGGcCGCAGa-CGCGGCuCG- -5'
6361 3' -59.9 NC_001847.1 + 53050 0.66 0.735268
Target:  5'- --cGCAGGCgcccuccggcgaCGGCGUCagacGCGCCGucGCu -3'
miRNA:   3'- acuCGUCUG------------GCCGCAGa---CGCGGCu-CG- -5'
6361 3' -59.9 NC_001847.1 + 78229 0.66 0.734306
Target:  5'- cGAGCucacGGuagucacccgcccGCCGGCGUCgccGuCGCCG-GCg -3'
miRNA:   3'- aCUCG----UC-------------UGGCCGCAGa--C-GCGGCuCG- -5'
6361 3' -59.9 NC_001847.1 + 15196 0.66 0.733344
Target:  5'- cUGGGCAGcggacccgcaccgcGCCGGCG-CguauagacgaaguacGCGCCG-GCg -3'
miRNA:   3'- -ACUCGUC--------------UGGCCGCaGa--------------CGCGGCuCG- -5'
6361 3' -59.9 NC_001847.1 + 22090 0.66 0.725612
Target:  5'- -aAGCGGGCcCGGCaggcGCGCCGGGg -3'
miRNA:   3'- acUCGUCUG-GCCGcagaCGCGGCUCg -5'
6361 3' -59.9 NC_001847.1 + 35439 0.66 0.725612
Target:  5'- cUGAGCacGGugCGGCG-CgacGCGgCCGcGGCg -3'
miRNA:   3'- -ACUCG--UCugGCCGCaGa--CGC-GGC-UCG- -5'
6361 3' -59.9 NC_001847.1 + 124903 0.66 0.725612
Target:  5'- -aAGCGGGCcCGGCaggcGCGCCGGGg -3'
miRNA:   3'- acUCGUCUG-GCCGcagaCGCGGCUCg -5'
6361 3' -59.9 NC_001847.1 + 106296 0.66 0.725612
Target:  5'- -uGGCGuccccGACCGGCGgcagCgGCGCCGucacGCu -3'
miRNA:   3'- acUCGU-----CUGGCCGCa---GaCGCGGCu---CG- -5'
6361 3' -59.9 NC_001847.1 + 8375 0.66 0.725612
Target:  5'- aGGGCGcGGCagcgugGGCGUCUGcCGCguaggcuaCGGGCa -3'
miRNA:   3'- aCUCGU-CUGg-----CCGCAGAC-GCG--------GCUCG- -5'
6361 3' -59.9 NC_001847.1 + 131830 0.66 0.725612
Target:  5'- -cGGCGGcAgCGGCGcCcGCGCCGcGCu -3'
miRNA:   3'- acUCGUC-UgGCCGCaGaCGCGGCuCG- -5'
6361 3' -59.9 NC_001847.1 + 39204 0.66 0.725612
Target:  5'- --cGCccGCCaGCGUUccgGCGCCGGGCu -3'
miRNA:   3'- acuCGucUGGcCGCAGa--CGCGGCUCG- -5'
6361 3' -59.9 NC_001847.1 + 29017 0.66 0.725612
Target:  5'- -cGGCGGcAgCGGCGcCcGCGCCGcGCu -3'
miRNA:   3'- acUCGUC-UgGCCGCaGaCGCGGCuCG- -5'
6361 3' -59.9 NC_001847.1 + 36419 0.66 0.725612
Target:  5'- cGcGCAGACCcuGCGaCgcGCGCCGuAGCg -3'
miRNA:   3'- aCuCGUCUGGc-CGCaGa-CGCGGC-UCG- -5'
6361 3' -59.9 NC_001847.1 + 37022 0.66 0.725612
Target:  5'- cGuGCGGAgCGGg----GCGCCGGGCu -3'
miRNA:   3'- aCuCGUCUgGCCgcagaCGCGGCUCG- -5'
6361 3' -59.9 NC_001847.1 + 3483 0.66 0.725612
Target:  5'- -uGGCGuccccGACCGGCGgcagCgGCGCCGucacGCu -3'
miRNA:   3'- acUCGU-----CUGGCCGCa---GaCGCGGCu---CG- -5'
6361 3' -59.9 NC_001847.1 + 32801 0.66 0.725612
Target:  5'- gGGGCGGACgGcGCGUUggaGCCGGacGCg -3'
miRNA:   3'- aCUCGUCUGgC-CGCAGacgCGGCU--CG- -5'
6361 3' -59.9 NC_001847.1 + 118782 0.66 0.725612
Target:  5'- gUGAGCGGcACCGGCaGcCgccaGCGCCuccaGGCc -3'
miRNA:   3'- -ACUCGUC-UGGCCG-CaGa---CGCGGc---UCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.