miRNA display CGI


Results 61 - 80 of 474 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6361 3' -59.9 NC_001847.1 + 15384 0.73 0.32925
Target:  5'- gGGGCGG-UCGGCGUCggggcugGgGCCGGGUu -3'
miRNA:   3'- aCUCGUCuGGCCGCAGa------CgCGGCUCG- -5'
6361 3' -59.9 NC_001847.1 + 15767 0.72 0.391611
Target:  5'- cGGGCGGcccgcuuucGCCGGCGgcaaGCGCCGcGCg -3'
miRNA:   3'- aCUCGUC---------UGGCCGCaga-CGCGGCuCG- -5'
6361 3' -59.9 NC_001847.1 + 16201 0.67 0.666346
Target:  5'- cGGGCugcuCgCGGcCGUCUGCGaaGGGCg -3'
miRNA:   3'- aCUCGucu-G-GCC-GCAGACGCggCUCG- -5'
6361 3' -59.9 NC_001847.1 + 16592 0.72 0.351749
Target:  5'- gGGGCGGcgugggguGCCGGCGaUCaGaCGCUGAGCa -3'
miRNA:   3'- aCUCGUC--------UGGCCGC-AGaC-GCGGCUCG- -5'
6361 3' -59.9 NC_001847.1 + 16697 0.66 0.686298
Target:  5'- cGGGCGaGCCGGCag--GCGCagaCGAGCa -3'
miRNA:   3'- aCUCGUcUGGCCGcagaCGCG---GCUCG- -5'
6361 3' -59.9 NC_001847.1 + 17158 0.71 0.425547
Target:  5'- gUGGGCGG-UUGGCGUC-GCGUccuCGAGCg -3'
miRNA:   3'- -ACUCGUCuGGCCGCAGaCGCG---GCUCG- -5'
6361 3' -59.9 NC_001847.1 + 17894 0.67 0.656326
Target:  5'- gGGGCGGGCggCGGCGUgCUGUugGUaaCGGGCg -3'
miRNA:   3'- aCUCGUCUG--GCCGCA-GACG--CG--GCUCG- -5'
6361 3' -59.9 NC_001847.1 + 17947 0.66 0.696212
Target:  5'- -cGGCGGcuCCGGCGUCccacggGCGuaguagcaCCGGGCg -3'
miRNA:   3'- acUCGUCu-GGCCGCAGa-----CGC--------GGCUCG- -5'
6361 3' -59.9 NC_001847.1 + 18173 0.69 0.536737
Target:  5'- -aGGCGG-UCGGCGUCgcaggGCaGCCgGAGCa -3'
miRNA:   3'- acUCGUCuGGCCGCAGa----CG-CGG-CUCG- -5'
6361 3' -59.9 NC_001847.1 + 18552 0.72 0.359487
Target:  5'- --cGCAGAgCGGCagcgCUGCGCCcaGAGCg -3'
miRNA:   3'- acuCGUCUgGCCGca--GACGCGG--CUCG- -5'
6361 3' -59.9 NC_001847.1 + 18561 0.66 0.686298
Target:  5'- gGGGCucgguGACCGGCccgUGUGCCGcGCc -3'
miRNA:   3'- aCUCGu----CUGGCCGcagACGCGGCuCG- -5'
6361 3' -59.9 NC_001847.1 + 18683 0.68 0.586092
Target:  5'- cUGAGCAGaACCGcgccGCGcgUGCGCC-AGCg -3'
miRNA:   3'- -ACUCGUC-UGGC----CGCagACGCGGcUCG- -5'
6361 3' -59.9 NC_001847.1 + 19260 0.7 0.488902
Target:  5'- -cGGCGGACCGGU-UCUG-GCCG-GCg -3'
miRNA:   3'- acUCGUCUGGCCGcAGACgCGGCuCG- -5'
6361 3' -59.9 NC_001847.1 + 19268 0.68 0.616138
Target:  5'- cGAGCcGGCgGcgcaGCGUCUGUGCggCGGGCc -3'
miRNA:   3'- aCUCGuCUGgC----CGCAGACGCG--GCUCG- -5'
6361 3' -59.9 NC_001847.1 + 19431 0.69 0.527027
Target:  5'- gGAGCgccaaAGGCCGcGCGcCcGCuGCCGGGCc -3'
miRNA:   3'- aCUCG-----UCUGGC-CGCaGaCG-CGGCUCG- -5'
6361 3' -59.9 NC_001847.1 + 19630 0.71 0.434302
Target:  5'- gGGGC--GCCGGCGUCgGCGCgCG-GCc -3'
miRNA:   3'- aCUCGucUGGCCGCAGaCGCG-GCuCG- -5'
6361 3' -59.9 NC_001847.1 + 19709 0.68 0.596084
Target:  5'- cGAGCAGAgCCgGGCG-CUGacggcaaGCCG-GCu -3'
miRNA:   3'- aCUCGUCU-GG-CCGCaGACg------CGGCuCG- -5'
6361 3' -59.9 NC_001847.1 + 20159 0.66 0.686298
Target:  5'- cGAuGCGGACuCGGCG-CUcaggcaacgggcGCGCCGGuauGCg -3'
miRNA:   3'- aCU-CGUCUG-GCCGCaGA------------CGCGGCU---CG- -5'
6361 3' -59.9 NC_001847.1 + 20263 0.69 0.556333
Target:  5'- aGAGCgAGA-CGGCGaggUCgGCGCCGcGCg -3'
miRNA:   3'- aCUCG-UCUgGCCGC---AGaCGCGGCuCG- -5'
6361 3' -59.9 NC_001847.1 + 21624 0.68 0.616138
Target:  5'- -cGGCGcuuGGCCGGCGcgggCcGCGCCcGGGCg -3'
miRNA:   3'- acUCGU---CUGGCCGCa---GaCGCGG-CUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.