miRNA display CGI


Results 81 - 100 of 188 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6361 5' -59.2 NC_001847.1 + 87461 0.67 0.599283
Target:  5'- -cGGCCc-CGCGGCGcGCGCCcGCUUc -3'
miRNA:   3'- auUUGGacGCGCCGCaCGCGGaCGAA- -5'
6361 5' -59.2 NC_001847.1 + 45672 0.67 0.588954
Target:  5'- cAGGCUUGCGaCGGCG-GCGCCg---- -3'
miRNA:   3'- aUUUGGACGC-GCCGCaCGCGGacgaa -5'
6361 5' -59.2 NC_001847.1 + 71728 0.67 0.588954
Target:  5'- --cGCCgGCGCcGCGUGCGCUcccgUGCg- -3'
miRNA:   3'- auuUGGaCGCGcCGCACGCGG----ACGaa -5'
6361 5' -59.2 NC_001847.1 + 27942 0.67 0.588954
Target:  5'- cAGGCCUGggcCGCGGCGcGCGCgCUcGCg- -3'
miRNA:   3'- aUUUGGAC---GCGCCGCaCGCG-GA-CGaa -5'
6361 5' -59.2 NC_001847.1 + 33318 0.67 0.588954
Target:  5'- -cAGCCUGUuguucGUGGCG-GCGCgCUGCg- -3'
miRNA:   3'- auUUGGACG-----CGCCGCaCGCG-GACGaa -5'
6361 5' -59.2 NC_001847.1 + 104534 0.67 0.588954
Target:  5'- -cGGCgCUGCGCGGCGgccccgGgGCC-GCUa -3'
miRNA:   3'- auUUG-GACGCGCCGCa-----CgCGGaCGAa -5'
6361 5' -59.2 NC_001847.1 + 121773 0.68 0.582772
Target:  5'- cGGACgUGCGCGccguucgcggcuggaGCGUccucgcggGCGCCUGCUc -3'
miRNA:   3'- aUUUGgACGCGC---------------CGCA--------CGCGGACGAa -5'
6361 5' -59.2 NC_001847.1 + 56184 0.68 0.578657
Target:  5'- cGAGgCUGCGCGaGCGccaGCCUGCg- -3'
miRNA:   3'- aUUUgGACGCGC-CGCacgCGGACGaa -5'
6361 5' -59.2 NC_001847.1 + 55458 0.68 0.578657
Target:  5'- --cGCCgGCGgGGCGcGCGCCgcGCUa -3'
miRNA:   3'- auuUGGaCGCgCCGCaCGCGGa-CGAa -5'
6361 5' -59.2 NC_001847.1 + 59400 0.68 0.578657
Target:  5'- gGAGCCggcggagGCGCGGCGgucaucgcUGCGCCccggGCc- -3'
miRNA:   3'- aUUUGGa------CGCGCCGC--------ACGCGGa---CGaa -5'
6361 5' -59.2 NC_001847.1 + 86435 0.68 0.5684
Target:  5'- -cGGCgCUGCGCGGCGcggGCaGCgUGCa- -3'
miRNA:   3'- auUUG-GACGCGCCGCa--CG-CGgACGaa -5'
6361 5' -59.2 NC_001847.1 + 16039 0.68 0.5684
Target:  5'- --uGCCUGCcccgccgccccGCGGCGgccgcgGCGCCUcuGCUg -3'
miRNA:   3'- auuUGGACG-----------CGCCGCa-----CGCGGA--CGAa -5'
6361 5' -59.2 NC_001847.1 + 41994 0.68 0.5684
Target:  5'- cGAGCgCUGCGuCGGCGcggaacgaagcUGCGCCgUGCc- -3'
miRNA:   3'- aUUUG-GACGC-GCCGC-----------ACGCGG-ACGaa -5'
6361 5' -59.2 NC_001847.1 + 131669 0.68 0.5684
Target:  5'- cGAGCUcucgGCGCgccGGCGcGCGCUUGCUg -3'
miRNA:   3'- aUUUGGa---CGCG---CCGCaCGCGGACGAa -5'
6361 5' -59.2 NC_001847.1 + 104738 0.68 0.5684
Target:  5'- cGAGCUUGC-CGGCGgccaGCGCCaGCg- -3'
miRNA:   3'- aUUUGGACGcGCCGCa---CGCGGaCGaa -5'
6361 5' -59.2 NC_001847.1 + 133368 0.68 0.5684
Target:  5'- gGGACCUGCGUGGCGggccucaucgaUGC-CCUGg-- -3'
miRNA:   3'- aUUUGGACGCGCCGC-----------ACGcGGACgaa -5'
6361 5' -59.2 NC_001847.1 + 20990 0.68 0.562268
Target:  5'- cUAGGCCUcccaaucggcaccgcGCGCGGCuGUGCGggcgacCCUGCg- -3'
miRNA:   3'- -AUUUGGA---------------CGCGCCG-CACGC------GGACGaa -5'
6361 5' -59.2 NC_001847.1 + 102993 0.68 0.558189
Target:  5'- --cGCC-GuCGCGGCGUGCGCggGCg- -3'
miRNA:   3'- auuUGGaC-GCGCCGCACGCGgaCGaa -5'
6361 5' -59.2 NC_001847.1 + 38549 0.68 0.558189
Target:  5'- aAAACCcGCGUuacuGGCa-GCGCCUGCUg -3'
miRNA:   3'- aUUUGGaCGCG----CCGcaCGCGGACGAa -5'
6361 5' -59.2 NC_001847.1 + 82654 0.68 0.54803
Target:  5'- cGAACCcgcgaGCGCGGCGcgccGCGCUcgUGCUg -3'
miRNA:   3'- aUUUGGa----CGCGCCGCa---CGCGG--ACGAa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.