miRNA display CGI


Results 61 - 80 of 188 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6361 5' -59.2 NC_001847.1 + 99210 0.67 0.620008
Target:  5'- -cGGCC-GCGCGGCGgcGCGCC-GCc- -3'
miRNA:   3'- auUUGGaCGCGCCGCa-CGCGGaCGaa -5'
6361 5' -59.2 NC_001847.1 + 131725 0.67 0.620008
Target:  5'- -cGGCCUGCGUGGCaUGaGCCgccGCUa -3'
miRNA:   3'- auUUGGACGCGCCGcACgCGGa--CGAa -5'
6361 5' -59.2 NC_001847.1 + 84242 0.67 0.620008
Target:  5'- -cGGCC-GCGCGGUacGUG-GCCUGCa- -3'
miRNA:   3'- auUUGGaCGCGCCG--CACgCGGACGaa -5'
6361 5' -59.2 NC_001847.1 + 50108 0.67 0.620008
Target:  5'- --cGCC-GgGCGGCGUagaGCGCCgGCUg -3'
miRNA:   3'- auuUGGaCgCGCCGCA---CGCGGaCGAa -5'
6361 5' -59.2 NC_001847.1 + 43139 0.67 0.620008
Target:  5'- cGGGCCcGCG-GGCGcUGCGCCcGCa- -3'
miRNA:   3'- aUUUGGaCGCgCCGC-ACGCGGaCGaa -5'
6361 5' -59.2 NC_001847.1 + 79682 0.67 0.620008
Target:  5'- -cGGCUaGCGCGGCGcGCGCCccgccgGCg- -3'
miRNA:   3'- auUUGGaCGCGCCGCaCGCGGa-----CGaa -5'
6361 5' -59.2 NC_001847.1 + 34562 0.67 0.620008
Target:  5'- -cGGCCgcUGCaGCGGCGgcaGCGCCUgGCg- -3'
miRNA:   3'- auUUGG--ACG-CGCCGCa--CGCGGA-CGaa -5'
6361 5' -59.2 NC_001847.1 + 106622 0.67 0.609637
Target:  5'- -cGGCCggGCgGCGGCG-GCGCgCUGCc- -3'
miRNA:   3'- auUUGGa-CG-CGCCGCaCGCG-GACGaa -5'
6361 5' -59.2 NC_001847.1 + 70696 0.67 0.609637
Target:  5'- --cGCCgcggGCgGCGGCGgggGCGCCcGCg- -3'
miRNA:   3'- auuUGGa---CG-CGCCGCa--CGCGGaCGaa -5'
6361 5' -59.2 NC_001847.1 + 50404 0.67 0.609637
Target:  5'- -cGugCUGCGguUGGUGcGCGCCUGCc- -3'
miRNA:   3'- auUugGACGC--GCCGCaCGCGGACGaa -5'
6361 5' -59.2 NC_001847.1 + 3153 0.67 0.609637
Target:  5'- --cGCCggcgGCGCGGCGggccgccuccaGCGCCUcGCg- -3'
miRNA:   3'- auuUGGa---CGCGCCGCa----------CGCGGA-CGaa -5'
6361 5' -59.2 NC_001847.1 + 3809 0.67 0.609637
Target:  5'- -cGGCCggGCgGCGGCG-GCGCgCUGCc- -3'
miRNA:   3'- auUUGGa-CG-CGCCGCaCGCG-GACGaa -5'
6361 5' -59.2 NC_001847.1 + 64846 0.67 0.609637
Target:  5'- gAGACCaGCGCGGC--GCGCC-GCg- -3'
miRNA:   3'- aUUUGGaCGCGCCGcaCGCGGaCGaa -5'
6361 5' -59.2 NC_001847.1 + 58809 0.67 0.609637
Target:  5'- --cGCCUGCGcCGGCGccUGgGCCggUGCg- -3'
miRNA:   3'- auuUGGACGC-GCCGC--ACgCGG--ACGaa -5'
6361 5' -59.2 NC_001847.1 + 105966 0.67 0.609637
Target:  5'- --cGCCggcgGCGCGGCGggccgccuccaGCGCCUcGCg- -3'
miRNA:   3'- auuUGGa---CGCGCCGCa----------CGCGGA-CGaa -5'
6361 5' -59.2 NC_001847.1 + 95126 0.67 0.599283
Target:  5'- cGAGCCUGCagucgcCGGCGcUGCGCUUGg-- -3'
miRNA:   3'- aUUUGGACGc-----GCCGC-ACGCGGACgaa -5'
6361 5' -59.2 NC_001847.1 + 9518 0.67 0.599283
Target:  5'- cGAGCCgagcgggcgGCGCGcuagcguccguGCGUGCGCCaGCg- -3'
miRNA:   3'- aUUUGGa--------CGCGC-----------CGCACGCGGaCGaa -5'
6361 5' -59.2 NC_001847.1 + 82343 0.67 0.599283
Target:  5'- ---gUgUGCGCGGCGccaggGCGCaCUGCa- -3'
miRNA:   3'- auuuGgACGCGCCGCa----CGCG-GACGaa -5'
6361 5' -59.2 NC_001847.1 + 87461 0.67 0.599283
Target:  5'- -cGGCCc-CGCGGCGcGCGCCcGCUUc -3'
miRNA:   3'- auUUGGacGCGCCGCaCGCGGaCGAA- -5'
6361 5' -59.2 NC_001847.1 + 67615 0.67 0.599283
Target:  5'- --cGCCUGCGgaaaaaGGCG-GCGCCgGCg- -3'
miRNA:   3'- auuUGGACGCg-----CCGCaCGCGGaCGaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.