miRNA display CGI


Results 61 - 80 of 188 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6361 5' -59.2 NC_001847.1 + 50404 0.67 0.609637
Target:  5'- -cGugCUGCGguUGGUGcGCGCCUGCc- -3'
miRNA:   3'- auUugGACGC--GCCGCaCGCGGACGaa -5'
6361 5' -59.2 NC_001847.1 + 133424 0.67 0.640771
Target:  5'- -uGGCCgcgGCGCGGCG-GCGgCUGa-- -3'
miRNA:   3'- auUUGGa--CGCGCCGCaCGCgGACgaa -5'
6361 5' -59.2 NC_001847.1 + 120198 0.67 0.640771
Target:  5'- -uGGCC-GCGCGaGCG-GCGCCcGCUc -3'
miRNA:   3'- auUUGGaCGCGC-CGCaCGCGGaCGAa -5'
6361 5' -59.2 NC_001847.1 + 3153 0.67 0.609637
Target:  5'- --cGCCggcgGCGCGGCGggccgccuccaGCGCCUcGCg- -3'
miRNA:   3'- auuUGGa---CGCGCCGCa----------CGCGGA-CGaa -5'
6361 5' -59.2 NC_001847.1 + 27942 0.67 0.588954
Target:  5'- cAGGCCUGggcCGCGGCGcGCGCgCUcGCg- -3'
miRNA:   3'- aUUUGGAC---GCGCCGCaCGCG-GA-CGaa -5'
6361 5' -59.2 NC_001847.1 + 33318 0.67 0.588954
Target:  5'- -cAGCCUGUuguucGUGGCG-GCGCgCUGCg- -3'
miRNA:   3'- auUUGGACG-----CGCCGCaCGCG-GACGaa -5'
6361 5' -59.2 NC_001847.1 + 45672 0.67 0.588954
Target:  5'- cAGGCUUGCGaCGGCG-GCGCCg---- -3'
miRNA:   3'- aUUUGGACGC-GCCGCaCGCGGacgaa -5'
6361 5' -59.2 NC_001847.1 + 95126 0.67 0.599283
Target:  5'- cGAGCCUGCagucgcCGGCGcUGCGCUUGg-- -3'
miRNA:   3'- aUUUGGACGc-----GCCGC-ACGCGGACgaa -5'
6361 5' -59.2 NC_001847.1 + 64846 0.67 0.609637
Target:  5'- gAGACCaGCGCGGC--GCGCC-GCg- -3'
miRNA:   3'- aUUUGGaCGCGCCGcaCGCGGaCGaa -5'
6361 5' -59.2 NC_001847.1 + 34562 0.67 0.620008
Target:  5'- -cGGCCgcUGCaGCGGCGgcaGCGCCUgGCg- -3'
miRNA:   3'- auUUGG--ACG-CGCCGCa--CGCGGA-CGaa -5'
6361 5' -59.2 NC_001847.1 + 18406 0.67 0.630389
Target:  5'- gAAGCaCaGCGCGGCGUGCaggGCCUugGCc- -3'
miRNA:   3'- aUUUG-GaCGCGCCGCACG---CGGA--CGaa -5'
6361 5' -59.2 NC_001847.1 + 48156 0.67 0.627274
Target:  5'- cGGGCCgGCGCgcgccggcccggccGGCG-GCGuCCUGCUg -3'
miRNA:   3'- aUUUGGaCGCG--------------CCGCaCGC-GGACGAa -5'
6361 5' -59.2 NC_001847.1 + 131725 0.67 0.620008
Target:  5'- -cGGCCUGCGUGGCaUGaGCCgccGCUa -3'
miRNA:   3'- auUUGGACGCGCCGcACgCGGa--CGAa -5'
6361 5' -59.2 NC_001847.1 + 50108 0.67 0.620008
Target:  5'- --cGCC-GgGCGGCGUagaGCGCCgGCUg -3'
miRNA:   3'- auuUGGaCgCGCCGCA---CGCGGaCGAa -5'
6361 5' -59.2 NC_001847.1 + 30611 0.67 0.640771
Target:  5'- -uGGCCgcgGCGCGGCG-GCGgCUGa-- -3'
miRNA:   3'- auUUGGa--CGCGCCGCaCGCgGACgaa -5'
6361 5' -59.2 NC_001847.1 + 118449 0.67 0.630389
Target:  5'- ---uCCUGCugGUGGCGgccucGUGCCUGCg- -3'
miRNA:   3'- auuuGGACG--CGCCGCa----CGCGGACGaa -5'
6361 5' -59.2 NC_001847.1 + 100567 0.67 0.630389
Target:  5'- cGGGCCuUGCGCaggucGGCGUGCagcuuggcgGCCUGUg- -3'
miRNA:   3'- aUUUGG-ACGCG-----CCGCACG---------CGGACGaa -5'
6361 5' -59.2 NC_001847.1 + 99210 0.67 0.620008
Target:  5'- -cGGCC-GCGCGGCGgcGCGCC-GCc- -3'
miRNA:   3'- auUUGGaCGCGCCGCa-CGCGGaCGaa -5'
6361 5' -59.2 NC_001847.1 + 84242 0.67 0.620008
Target:  5'- -cGGCC-GCGCGGUacGUG-GCCUGCa- -3'
miRNA:   3'- auUUGGaCGCGCCG--CACgCGGACGaa -5'
6361 5' -59.2 NC_001847.1 + 79682 0.67 0.620008
Target:  5'- -cGGCUaGCGCGGCGcGCGCCccgccgGCg- -3'
miRNA:   3'- auUUGGaCGCGCCGCaCGCGGa-----CGaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.