miRNA display CGI


Results 41 - 60 of 188 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6361 5' -59.2 NC_001847.1 + 39834 0.66 0.682142
Target:  5'- ---cCCUGC-CGGCGccGCGCCUGg-- -3'
miRNA:   3'- auuuGGACGcGCCGCa-CGCGGACgaa -5'
6361 5' -59.2 NC_001847.1 + 6109 0.66 0.682142
Target:  5'- --cGCCcgcgagGCGCGGCGcgaGCGCCUcGCc- -3'
miRNA:   3'- auuUGGa-----CGCGCCGCa--CGCGGA-CGaa -5'
6361 5' -59.2 NC_001847.1 + 75949 0.66 0.682142
Target:  5'- --cGCCacaCGCGGCGUGUGCUcguUGCa- -3'
miRNA:   3'- auuUGGac-GCGCCGCACGCGG---ACGaa -5'
6361 5' -59.2 NC_001847.1 + 118747 0.66 0.67184
Target:  5'- --cGCCccGCGCGGC-UGCGCgaGCg- -3'
miRNA:   3'- auuUGGa-CGCGCCGcACGCGgaCGaa -5'
6361 5' -59.2 NC_001847.1 + 12219 0.66 0.649072
Target:  5'- -uGGCUUGCGCGGCGcGCGCacacccgaacgGCg- -3'
miRNA:   3'- auUUGGACGCGCCGCaCGCGga---------CGaa -5'
6361 5' -59.2 NC_001847.1 + 80360 0.66 0.651146
Target:  5'- cGGAag-GCGCGGCGUGCGCaaaacccauuaUGCa- -3'
miRNA:   3'- aUUUggaCGCGCCGCACGCGg----------ACGaa -5'
6361 5' -59.2 NC_001847.1 + 94213 0.66 0.655292
Target:  5'- -cGACCUGCgGCGGCGgcacgaaaaggccguUGUGCC-GCg- -3'
miRNA:   3'- auUUGGACG-CGCCGC---------------ACGCGGaCGaa -5'
6361 5' -59.2 NC_001847.1 + 133424 0.67 0.640771
Target:  5'- -uGGCCgcgGCGCGGCG-GCGgCUGa-- -3'
miRNA:   3'- auUUGGa--CGCGCCGCaCGCgGACgaa -5'
6361 5' -59.2 NC_001847.1 + 10970 0.67 0.644922
Target:  5'- --uACgUgGCGCGGCGcgcgaagucucuugGCGCCUGCa- -3'
miRNA:   3'- auuUGgA-CGCGCCGCa-------------CGCGGACGaa -5'
6361 5' -59.2 NC_001847.1 + 32162 0.67 0.640771
Target:  5'- --cGCC-GCGaCGGCGUGCGCg-GCg- -3'
miRNA:   3'- auuUGGaCGC-GCCGCACGCGgaCGaa -5'
6361 5' -59.2 NC_001847.1 + 34761 0.67 0.640771
Target:  5'- cGAGCUgGCGCGGCuGcGCGCCgcgGCc- -3'
miRNA:   3'- aUUUGGaCGCGCCG-CaCGCGGa--CGaa -5'
6361 5' -59.2 NC_001847.1 + 50404 0.67 0.609637
Target:  5'- -cGugCUGCGguUGGUGcGCGCCUGCc- -3'
miRNA:   3'- auUugGACGC--GCCGCaCGCGGACGaa -5'
6361 5' -59.2 NC_001847.1 + 3153 0.67 0.609637
Target:  5'- --cGCCggcgGCGCGGCGggccgccuccaGCGCCUcGCg- -3'
miRNA:   3'- auuUGGa---CGCGCCGCa----------CGCGGA-CGaa -5'
6361 5' -59.2 NC_001847.1 + 95126 0.67 0.599283
Target:  5'- cGAGCCUGCagucgcCGGCGcUGCGCUUGg-- -3'
miRNA:   3'- aUUUGGACGc-----GCCGC-ACGCGGACgaa -5'
6361 5' -59.2 NC_001847.1 + 79484 0.67 0.599283
Target:  5'- cGAGCCggaGCGCGGCGcGCacGUCUGUg- -3'
miRNA:   3'- aUUUGGa--CGCGCCGCaCG--CGGACGaa -5'
6361 5' -59.2 NC_001847.1 + 67615 0.67 0.599283
Target:  5'- --cGCCUGCGgaaaaaGGCG-GCGCCgGCg- -3'
miRNA:   3'- auuUGGACGCg-----CCGCaCGCGGaCGaa -5'
6361 5' -59.2 NC_001847.1 + 77810 0.67 0.640771
Target:  5'- aGGACgUgGCGCGGCGcGUGCCgGCc- -3'
miRNA:   3'- aUUUGgA-CGCGCCGCaCGCGGaCGaa -5'
6361 5' -59.2 NC_001847.1 + 64846 0.67 0.609637
Target:  5'- gAGACCaGCGCGGC--GCGCC-GCg- -3'
miRNA:   3'- aUUUGGaCGCGCCGcaCGCGGaCGaa -5'
6361 5' -59.2 NC_001847.1 + 48156 0.67 0.627274
Target:  5'- cGGGCCgGCGCgcgccggcccggccGGCG-GCGuCCUGCUg -3'
miRNA:   3'- aUUUGGaCGCG--------------CCGCaCGC-GGACGAa -5'
6361 5' -59.2 NC_001847.1 + 44914 0.67 0.630389
Target:  5'- gGGGCgUGCGCGaCGcGCGCgUGCUg -3'
miRNA:   3'- aUUUGgACGCGCcGCaCGCGgACGAa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.