miRNA display CGI


Results 41 - 60 of 188 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6361 5' -59.2 NC_001847.1 + 132801 0.69 0.488512
Target:  5'- cGGGCCgGCGCGGCGggaGCcGCC-GCUg -3'
miRNA:   3'- aUUUGGaCGCGCCGCa--CG-CGGaCGAa -5'
6361 5' -59.2 NC_001847.1 + 28185 0.71 0.396838
Target:  5'- --uACCUG-GCGGcCGcGCGCCUGCg- -3'
miRNA:   3'- auuUGGACgCGCC-GCaCGCGGACGaa -5'
6361 5' -59.2 NC_001847.1 + 66235 0.74 0.25601
Target:  5'- cGAACCUcaGCGCGGCG-GCGCUcggcaUGCUg -3'
miRNA:   3'- aUUUGGA--CGCGCCGCaCGCGG-----ACGAa -5'
6361 5' -59.2 NC_001847.1 + 84542 0.69 0.488512
Target:  5'- cGGGCgggGCGgGGCGUGCGCCUcGUa- -3'
miRNA:   3'- aUUUGga-CGCgCCGCACGCGGA-CGaa -5'
6361 5' -59.2 NC_001847.1 + 105564 0.74 0.249862
Target:  5'- -cGGCCcgGCGCGGCG-GCGCCgGCg- -3'
miRNA:   3'- auUUGGa-CGCGCCGCaCGCGGaCGaa -5'
6361 5' -59.2 NC_001847.1 + 55458 0.68 0.578657
Target:  5'- --cGCCgGCGgGGCGcGCGCCgcGCUa -3'
miRNA:   3'- auuUGGaCGCgCCGCaCGCGGa-CGAa -5'
6361 5' -59.2 NC_001847.1 + 34267 0.73 0.281846
Target:  5'- cAGACCggcGCGCGGCGgcuggGCGCCgcGCUc -3'
miRNA:   3'- aUUUGGa--CGCGCCGCa----CGCGGa-CGAa -5'
6361 5' -59.2 NC_001847.1 + 86435 0.68 0.5684
Target:  5'- -cGGCgCUGCGCGGCGcggGCaGCgUGCa- -3'
miRNA:   3'- auUUG-GACGCGCCGCa--CG-CGgACGaa -5'
6361 5' -59.2 NC_001847.1 + 38549 0.68 0.558189
Target:  5'- aAAACCcGCGUuacuGGCa-GCGCCUGCUg -3'
miRNA:   3'- aUUUGGaCGCG----CCGcaCGCGGACGAa -5'
6361 5' -59.2 NC_001847.1 + 124974 0.68 0.527896
Target:  5'- aAAGCCgGCGCaGCGgGCcgGCCUGCUc -3'
miRNA:   3'- aUUUGGaCGCGcCGCaCG--CGGACGAa -5'
6361 5' -59.2 NC_001847.1 + 29166 0.68 0.527896
Target:  5'- cAAACCUGCacccguacuacGCGGaCGUGCuGCCguUGCUg -3'
miRNA:   3'- aUUUGGACG-----------CGCC-GCACG-CGG--ACGAa -5'
6361 5' -59.2 NC_001847.1 + 13927 0.69 0.508042
Target:  5'- gAGGCCcGCGaCGGCGUcauGCGCgaGCUg -3'
miRNA:   3'- aUUUGGaCGC-GCCGCA---CGCGgaCGAa -5'
6361 5' -59.2 NC_001847.1 + 43890 0.69 0.498234
Target:  5'- -cGACCccaugUGCGCcGCGUGCGgCUGCa- -3'
miRNA:   3'- auUUGG-----ACGCGcCGCACGCgGACGaa -5'
6361 5' -59.2 NC_001847.1 + 68060 0.7 0.4599
Target:  5'- -cGGCCU-CGCGGC--GCGCCUGCg- -3'
miRNA:   3'- auUUGGAcGCGCCGcaCGCGGACGaa -5'
6361 5' -59.2 NC_001847.1 + 133921 0.7 0.432203
Target:  5'- -uGGCCUGCggGCGGCGcGCGCUggaGCUg -3'
miRNA:   3'- auUUGGACG--CGCCGCaCGCGGa--CGAa -5'
6361 5' -59.2 NC_001847.1 + 49449 0.7 0.414289
Target:  5'- cGAACgUGUuugucuuucacgGCGGCGaGCGCCUGCg- -3'
miRNA:   3'- aUUUGgACG------------CGCCGCaCGCGGACGaa -5'
6361 5' -59.2 NC_001847.1 + 18689 0.71 0.405504
Target:  5'- aGAACC-GCGcCGcGCGUGCGCCaGCg- -3'
miRNA:   3'- aUUUGGaCGC-GC-CGCACGCGGaCGaa -5'
6361 5' -59.2 NC_001847.1 + 34103 0.71 0.369921
Target:  5'- -uGGCUcGCGCGGCGgcggagccugcgGCGCCUGCc- -3'
miRNA:   3'- auUUGGaCGCGCCGCa-----------CGCGGACGaa -5'
6361 5' -59.2 NC_001847.1 + 20077 0.72 0.347414
Target:  5'- --uGCCUGCGCucggGGCGaGCGCCaGCUg -3'
miRNA:   3'- auuUGGACGCG----CCGCaCGCGGaCGAa -5'
6361 5' -59.2 NC_001847.1 + 27995 0.73 0.301841
Target:  5'- cUGGGCCgcgcugcagcGCGCGGCGUgccgcgcuuacgaGCGCCUGCa- -3'
miRNA:   3'- -AUUUGGa---------CGCGCCGCA-------------CGCGGACGaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.