miRNA display CGI


Results 21 - 40 of 188 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6361 5' -59.2 NC_001847.1 + 123793 0.76 0.183398
Target:  5'- gGGGCCUGCGCGGCGgcggcagcggcagGCGCCguccugGCg- -3'
miRNA:   3'- aUUUGGACGCGCCGCa------------CGCGGa-----CGaa -5'
6361 5' -59.2 NC_001847.1 + 59207 0.69 0.46934
Target:  5'- cGAGCCgucCGCGcCGUGCGCUUGCa- -3'
miRNA:   3'- aUUUGGac-GCGCcGCACGCGGACGaa -5'
6361 5' -59.2 NC_001847.1 + 68060 0.7 0.4599
Target:  5'- -cGGCCU-CGCGGC--GCGCCUGCg- -3'
miRNA:   3'- auUUGGAcGCGCCGcaCGCGGACGaa -5'
6361 5' -59.2 NC_001847.1 + 90775 0.71 0.405504
Target:  5'- --cGCCUGCGCGGCGagGgGCCcGUUc -3'
miRNA:   3'- auuUGGACGCGCCGCa-CgCGGaCGAa -5'
6361 5' -59.2 NC_001847.1 + 104415 0.72 0.347414
Target:  5'- cGGGCCagcGCGCGGCGcacUGCGCCgcgGCa- -3'
miRNA:   3'- aUUUGGa--CGCGCCGC---ACGCGGa--CGaa -5'
6361 5' -59.2 NC_001847.1 + 13436 0.69 0.502147
Target:  5'- gGGGCCUGCGCuggcuguaucuagcgGGCGcGCaCCUGCUc -3'
miRNA:   3'- aUUUGGACGCG---------------CCGCaCGcGGACGAa -5'
6361 5' -59.2 NC_001847.1 + 84542 0.69 0.488512
Target:  5'- cGGGCgggGCGgGGCGUGCGCCUcGUa- -3'
miRNA:   3'- aUUUGga-CGCgCCGCACGCGGA-CGaa -5'
6361 5' -59.2 NC_001847.1 + 83114 0.73 0.30255
Target:  5'- aUGAGCCccugGCGCGaGCGcuagugcGCGCCUGCUg -3'
miRNA:   3'- -AUUUGGa---CGCGC-CGCa------CGCGGACGAa -5'
6361 5' -59.2 NC_001847.1 + 10858 0.7 0.423189
Target:  5'- -uGGCCgagGCGCGGCGggcgcggGCGCCcagGCa- -3'
miRNA:   3'- auUUGGa--CGCGCCGCa------CGCGGa--CGaa -5'
6361 5' -59.2 NC_001847.1 + 49449 0.7 0.414289
Target:  5'- cGAACgUGUuugucuuucacgGCGGCGaGCGCCUGCg- -3'
miRNA:   3'- aUUUGgACG------------CGCCGCaCGCGGACGaa -5'
6361 5' -59.2 NC_001847.1 + 131575 0.73 0.28862
Target:  5'- cGGACCUGCaGCuGGC--GCGCCUGCUg -3'
miRNA:   3'- aUUUGGACG-CG-CCGcaCGCGGACGAa -5'
6361 5' -59.2 NC_001847.1 + 56072 0.73 0.281846
Target:  5'- gAAGCCUGCGCGGCugagcGCGCCcggggUGCg- -3'
miRNA:   3'- aUUUGGACGCGCCGca---CGCGG-----ACGaa -5'
6361 5' -59.2 NC_001847.1 + 131881 0.69 0.508042
Target:  5'- -cGGCC-GCGCGGCGccgGCGCCccUGCc- -3'
miRNA:   3'- auUUGGaCGCGCCGCa--CGCGG--ACGaa -5'
6361 5' -59.2 NC_001847.1 + 131819 0.69 0.508042
Target:  5'- gAGGCCgGCGcCGGCGgcagcgGCGCCcGCg- -3'
miRNA:   3'- aUUUGGaCGC-GCCGCa-----CGCGGaCGaa -5'
6361 5' -59.2 NC_001847.1 + 33579 0.7 0.4599
Target:  5'- -cGGCCgUGCGCGGUGccgacgacguccUGCGCCaGCUg -3'
miRNA:   3'- auUUGG-ACGCGCCGC------------ACGCGGaCGAa -5'
6361 5' -59.2 NC_001847.1 + 53716 0.71 0.371567
Target:  5'- gUGGGCCgGCGgcUGGCGcugUGCGCCUGCg- -3'
miRNA:   3'- -AUUUGGaCGC--GCCGC---ACGCGGACGaa -5'
6361 5' -59.2 NC_001847.1 + 33153 0.71 0.36339
Target:  5'- -uGGCgaGCGCGGCGguUGCGCC-GCUg -3'
miRNA:   3'- auUUGgaCGCGCCGC--ACGCGGaCGAa -5'
6361 5' -59.2 NC_001847.1 + 34267 0.73 0.281846
Target:  5'- cAGACCggcGCGCGGCGgcuggGCGCCgcGCUc -3'
miRNA:   3'- aUUUGGa--CGCGCCGCa----CGCGGa-CGAa -5'
6361 5' -59.2 NC_001847.1 + 133529 0.7 0.414289
Target:  5'- cGGugCUGcCGCGGCGcagUGCGCCgcgcGCUg -3'
miRNA:   3'- aUUugGAC-GCGCCGC---ACGCGGa---CGAa -5'
6361 5' -59.2 NC_001847.1 + 86511 0.7 0.423189
Target:  5'- --cACCgucGCGCGGCGgcuggGCGCCcGCg- -3'
miRNA:   3'- auuUGGa--CGCGCCGCa----CGCGGaCGaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.