Results 21 - 40 of 188 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6361 | 5' | -59.2 | NC_001847.1 | + | 49449 | 0.7 | 0.414289 |
Target: 5'- cGAACgUGUuugucuuucacgGCGGCGaGCGCCUGCg- -3' miRNA: 3'- aUUUGgACG------------CGCCGCaCGCGGACGaa -5' |
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6361 | 5' | -59.2 | NC_001847.1 | + | 18689 | 0.71 | 0.405504 |
Target: 5'- aGAACC-GCGcCGcGCGUGCGCCaGCg- -3' miRNA: 3'- aUUUGGaCGC-GC-CGCACGCGGaCGaa -5' |
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6361 | 5' | -59.2 | NC_001847.1 | + | 87062 | 0.72 | 0.331947 |
Target: 5'- -cAGCUUccGCGCGGCGUGCGCCcccGCc- -3' miRNA: 3'- auUUGGA--CGCGCCGCACGCGGa--CGaa -5' |
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6361 | 5' | -59.2 | NC_001847.1 | + | 95657 | 0.74 | 0.25601 |
Target: 5'- gGAGCCUGCGCGGCGgGCuggucuccaugGCaCUGCa- -3' miRNA: 3'- aUUUGGACGCGCCGCaCG-----------CG-GACGaa -5' |
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6361 | 5' | -59.2 | NC_001847.1 | + | 18971 | 0.69 | 0.498234 |
Target: 5'- -cGACCaGCGCGGCcgcgGCGCCcGCg- -3' miRNA: 3'- auUUGGaCGCGCCGca--CGCGGaCGaa -5' |
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6361 | 5' | -59.2 | NC_001847.1 | + | 2187 | 0.7 | 0.450562 |
Target: 5'- --cGCCUGgGCGGCGUGCGg--GCg- -3' miRNA: 3'- auuUGGACgCGCCGCACGCggaCGaa -5' |
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6361 | 5' | -59.2 | NC_001847.1 | + | 28185 | 0.71 | 0.396838 |
Target: 5'- --uACCUG-GCGGcCGcGCGCCUGCg- -3' miRNA: 3'- auuUGGACgCGCC-GCaCGCGGACGaa -5' |
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6361 | 5' | -59.2 | NC_001847.1 | + | 66235 | 0.74 | 0.25601 |
Target: 5'- cGAACCUcaGCGCGGCG-GCGCUcggcaUGCUg -3' miRNA: 3'- aUUUGGA--CGCGCCGCaCGCGG-----ACGAa -5' |
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6361 | 5' | -59.2 | NC_001847.1 | + | 133921 | 0.7 | 0.432203 |
Target: 5'- -uGGCCUGCggGCGGCGcGCGCUggaGCUg -3' miRNA: 3'- auUUGGACG--CGCCGCaCGCGGa--CGAa -5' |
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6361 | 5' | -59.2 | NC_001847.1 | + | 105564 | 0.74 | 0.249862 |
Target: 5'- -cGGCCcgGCGCGGCG-GCGCCgGCg- -3' miRNA: 3'- auUUGGa-CGCGCCGCaCGCGGaCGaa -5' |
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6361 | 5' | -59.2 | NC_001847.1 | + | 106119 | 0.71 | 0.396838 |
Target: 5'- -cGGCgaGCGCGGCGcggGCGCC-GCUg -3' miRNA: 3'- auUUGgaCGCGCCGCa--CGCGGaCGAa -5' |
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6361 | 5' | -59.2 | NC_001847.1 | + | 78665 | 0.7 | 0.414289 |
Target: 5'- --cGCCUGCGUcgccGGCGUGCGCaCgcggGCg- -3' miRNA: 3'- auuUGGACGCG----CCGCACGCG-Ga---CGaa -5' |
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6361 | 5' | -59.2 | NC_001847.1 | + | 34103 | 0.71 | 0.369921 |
Target: 5'- -uGGCUcGCGCGGCGgcggagccugcgGCGCCUGCc- -3' miRNA: 3'- auUUGGaCGCGCCGCa-----------CGCGGACGaa -5' |
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6361 | 5' | -59.2 | NC_001847.1 | + | 20077 | 0.72 | 0.347414 |
Target: 5'- --uGCCUGCGCucggGGCGaGCGCCaGCUg -3' miRNA: 3'- auuUGGACGCG----CCGCaCGCGGaCGAa -5' |
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6361 | 5' | -59.2 | NC_001847.1 | + | 27995 | 0.73 | 0.301841 |
Target: 5'- cUGGGCCgcgcugcagcGCGCGGCGUgccgcgcuuacgaGCGCCUGCa- -3' miRNA: 3'- -AUUUGGa---------CGCGCCGCA-------------CGCGGACGaa -5' |
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6361 | 5' | -59.2 | NC_001847.1 | + | 34267 | 0.73 | 0.281846 |
Target: 5'- cAGACCggcGCGCGGCGgcuggGCGCCgcGCUc -3' miRNA: 3'- aUUUGGa--CGCGCCGCa----CGCGGa-CGAa -5' |
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6361 | 5' | -59.2 | NC_001847.1 | + | 13927 | 0.69 | 0.508042 |
Target: 5'- gAGGCCcGCGaCGGCGUcauGCGCgaGCUg -3' miRNA: 3'- aUUUGGaCGC-GCCGCA---CGCGgaCGAa -5' |
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6361 | 5' | -59.2 | NC_001847.1 | + | 43890 | 0.69 | 0.498234 |
Target: 5'- -cGACCccaugUGCGCcGCGUGCGgCUGCa- -3' miRNA: 3'- auUUGG-----ACGCGcCGCACGCgGACGaa -5' |
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6361 | 5' | -59.2 | NC_001847.1 | + | 4219 | 0.69 | 0.478879 |
Target: 5'- aAAGcCCUGCGCGGUGccggcgcGCGCCgGCa- -3' miRNA: 3'- aUUU-GGACGCGCCGCa------CGCGGaCGaa -5' |
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6361 | 5' | -59.2 | NC_001847.1 | + | 33579 | 0.7 | 0.4599 |
Target: 5'- -cGGCCgUGCGCGGUGccgacgacguccUGCGCCaGCUg -3' miRNA: 3'- auUUGG-ACGCGCCGC------------ACGCGGaCGAa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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